Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS24020

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS13180 and RALBFv3_RS24020 are separated by 65 nucleotidesRALBFv3_RS24020 and RALBFv3_RS13190 are separated by 49 nucleotides RALBFv3_RS13180: RALBFv3_RS13180 - glutamine--tRNA ligase, at 2,889,493 to 2,891,235 _RS13180 RALBFv3_RS24020: RALBFv3_RS24020 - hypothetical protein, at 2,891,301 to 2,891,618 _RS24020 RALBFv3_RS13190: RALBFv3_RS13190 - tripartite tricarboxylate transporter permease, at 2,891,668 to 2,893,170 _RS13190 Position (kb) 2891 2892Strain fitness (log2 ratio) -1 0 1at 2891.268 kb on - strandat 2891.461 kb on + strand, within RALBFv3_RS24020at 2891.461 kb on + strand, within RALBFv3_RS24020at 2891.670 kb on - strandat 2891.670 kb on - strandat 2891.960 kb on + strand, within RALBFv3_RS13190at 2891.960 kb on - strand, within RALBFv3_RS13190at 2891.961 kb on - strand, within RALBFv3_RS13190at 2892.336 kb on - strand, within RALBFv3_RS13190

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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2,891,268 - -0.0
2,891,461 + RALBFv3_RS24020 0.50 +0.8
2,891,461 + RALBFv3_RS24020 0.50 +0.4
2,891,670 - -0.7
2,891,670 - -0.2
2,891,960 + RALBFv3_RS13190 0.19 -0.2
2,891,960 - RALBFv3_RS13190 0.19 -0.3
2,891,961 - RALBFv3_RS13190 0.19 -0.4
2,892,336 - RALBFv3_RS13190 0.44 +0.2

Or see this region's nucleotide sequence