Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS22690

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS22680 and RALBFv3_RS22685 overlap by 4 nucleotidesRALBFv3_RS22685 and RALBFv3_RS22690 overlap by 4 nucleotidesRALBFv3_RS22690 and RALBFv3_RS22695 overlap by 4 nucleotides RALBFv3_RS22680: RALBFv3_RS22680 - hypothetical protein, at 1,864,026 to 1,864,544 _RS22680 RALBFv3_RS22685: RALBFv3_RS22685 - hypothetical protein, at 1,864,541 to 1,865,083 _RS22685 RALBFv3_RS22690: RALBFv3_RS22690 - hypothetical protein, at 1,865,080 to 1,865,592 _RS22690 RALBFv3_RS22695: RALBFv3_RS22695 - general secretion pathway protein GspD, at 1,865,589 to 1,867,853 _RS22695 Position (kb) 1865 1866Strain fitness (log2 ratio) -2 -1 0 1 2at 1864.119 kb on + strand, within RALBFv3_RS22680at 1864.119 kb on + strand, within RALBFv3_RS22680at 1864.119 kb on + strand, within RALBFv3_RS22680at 1864.120 kb on - strand, within RALBFv3_RS22680at 1864.120 kb on - strand, within RALBFv3_RS22680at 1864.413 kb on + strand, within RALBFv3_RS22680at 1864.413 kb on + strand, within RALBFv3_RS22680at 1864.413 kb on + strand, within RALBFv3_RS22680at 1864.414 kb on - strand, within RALBFv3_RS22680at 1864.414 kb on - strand, within RALBFv3_RS22680at 1864.491 kb on + strand, within RALBFv3_RS22680at 1864.491 kb on + strand, within RALBFv3_RS22680at 1864.492 kb on - strand, within RALBFv3_RS22680at 1864.492 kb on - strand, within RALBFv3_RS22680at 1864.492 kb on - strand, within RALBFv3_RS22680at 1864.558 kb on - strandat 1864.865 kb on + strand, within RALBFv3_RS22685at 1864.865 kb on + strand, within RALBFv3_RS22685at 1864.865 kb on + strand, within RALBFv3_RS22685at 1864.866 kb on - strand, within RALBFv3_RS22685at 1864.866 kb on - strand, within RALBFv3_RS22685at 1864.866 kb on - strand, within RALBFv3_RS22685at 1864.895 kb on + strand, within RALBFv3_RS22685at 1864.895 kb on + strand, within RALBFv3_RS22685at 1864.895 kb on + strand, within RALBFv3_RS22685at 1864.895 kb on + strand, within RALBFv3_RS22685at 1864.895 kb on + strand, within RALBFv3_RS22685at 1864.896 kb on - strand, within RALBFv3_RS22685at 1865.064 kb on - strandat 1865.064 kb on - strandat 1865.226 kb on + strand, within RALBFv3_RS22690at 1865.227 kb on - strand, within RALBFv3_RS22690at 1865.227 kb on - strand, within RALBFv3_RS22690at 1865.542 kb on + strandat 1865.542 kb on + strandat 1865.543 kb on - strandat 1865.543 kb on - strandat 1865.543 kb on - strandat 1865.576 kb on + strandat 1865.674 kb on - strandat 1865.781 kb on + strandat 1865.781 kb on + strandat 1865.874 kb on + strand, within RALBFv3_RS22695at 1865.874 kb on + strand, within RALBFv3_RS22695at 1865.875 kb on - strand, within RALBFv3_RS22695at 1865.875 kb on - strand, within RALBFv3_RS22695at 1865.875 kb on - strand, within RALBFv3_RS22695at 1865.875 kb on - strand, within RALBFv3_RS22695at 1866.245 kb on + strand, within RALBFv3_RS22695at 1866.257 kb on - strand, within RALBFv3_RS22695at 1866.257 kb on - strand, within RALBFv3_RS22695at 1866.257 kb on - strand, within RALBFv3_RS22695at 1866.354 kb on + strand, within RALBFv3_RS22695at 1866.384 kb on + strand, within RALBFv3_RS22695at 1866.446 kb on + strand, within RALBFv3_RS22695at 1866.448 kb on - strand, within RALBFv3_RS22695

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,864,119 + RALBFv3_RS22680 0.18 -0.4
1,864,119 + RALBFv3_RS22680 0.18 +0.6
1,864,119 + RALBFv3_RS22680 0.18 -0.1
1,864,120 - RALBFv3_RS22680 0.18 -1.8
1,864,120 - RALBFv3_RS22680 0.18 -0.5
1,864,413 + RALBFv3_RS22680 0.75 +0.0
1,864,413 + RALBFv3_RS22680 0.75 -0.4
1,864,413 + RALBFv3_RS22680 0.75 -0.2
1,864,414 - RALBFv3_RS22680 0.75 +0.1
1,864,414 - RALBFv3_RS22680 0.75 +0.2
1,864,491 + RALBFv3_RS22680 0.90 +0.5
1,864,491 + RALBFv3_RS22680 0.90 -0.2
1,864,492 - RALBFv3_RS22680 0.90 -0.1
1,864,492 - RALBFv3_RS22680 0.90 +0.8
1,864,492 - RALBFv3_RS22680 0.90 -0.2
1,864,558 - -2.5
1,864,865 + RALBFv3_RS22685 0.60 -0.1
1,864,865 + RALBFv3_RS22685 0.60 +2.0
1,864,865 + RALBFv3_RS22685 0.60 -0.2
1,864,866 - RALBFv3_RS22685 0.60 -0.4
1,864,866 - RALBFv3_RS22685 0.60 -0.8
1,864,866 - RALBFv3_RS22685 0.60 -1.0
1,864,895 + RALBFv3_RS22685 0.65 -0.2
1,864,895 + RALBFv3_RS22685 0.65 +0.8
1,864,895 + RALBFv3_RS22685 0.65 +0.7
1,864,895 + RALBFv3_RS22685 0.65 -0.3
1,864,895 + RALBFv3_RS22685 0.65 -0.7
1,864,896 - RALBFv3_RS22685 0.65 +0.1
1,865,064 - -0.5
1,865,064 - -0.9
1,865,226 + RALBFv3_RS22690 0.28 +0.5
1,865,227 - RALBFv3_RS22690 0.29 +0.2
1,865,227 - RALBFv3_RS22690 0.29 +0.5
1,865,542 + +0.8
1,865,542 + -0.1
1,865,543 - +0.1
1,865,543 - -0.5
1,865,543 - -0.5
1,865,576 + -1.0
1,865,674 - -0.0
1,865,781 + +0.3
1,865,781 + +0.3
1,865,874 + RALBFv3_RS22695 0.13 +0.4
1,865,874 + RALBFv3_RS22695 0.13 -0.4
1,865,875 - RALBFv3_RS22695 0.13 +0.8
1,865,875 - RALBFv3_RS22695 0.13 -1.0
1,865,875 - RALBFv3_RS22695 0.13 -0.1
1,865,875 - RALBFv3_RS22695 0.13 -0.6
1,866,245 + RALBFv3_RS22695 0.29 +1.0
1,866,257 - RALBFv3_RS22695 0.29 +0.8
1,866,257 - RALBFv3_RS22695 0.29 +0.3
1,866,257 - RALBFv3_RS22695 0.29 +0.4
1,866,354 + RALBFv3_RS22695 0.34 +0.3
1,866,384 + RALBFv3_RS22695 0.35 -0.7
1,866,446 + RALBFv3_RS22695 0.38 +0.7
1,866,448 - RALBFv3_RS22695 0.38 +1.0

Or see this region's nucleotide sequence