Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS22680 and RALBFv3_RS22685 overlap by 4 nucleotides RALBFv3_RS22685 and RALBFv3_RS22690 overlap by 4 nucleotides RALBFv3_RS22690 and RALBFv3_RS22695 overlap by 4 nucleotides
RALBFv3_RS22680: RALBFv3_RS22680 - hypothetical protein, at 1,864,026 to 1,864,544
_RS22680
RALBFv3_RS22685: RALBFv3_RS22685 - hypothetical protein, at 1,864,541 to 1,865,083
_RS22685
RALBFv3_RS22690: RALBFv3_RS22690 - hypothetical protein, at 1,865,080 to 1,865,592
_RS22690
RALBFv3_RS22695: RALBFv3_RS22695 - general secretion pathway protein GspD, at 1,865,589 to 1,867,853
_RS22695
Position (kb)
1865
1866 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1864.119 kb on + strand, within RALBFv3_RS22680 at 1864.119 kb on + strand, within RALBFv3_RS22680 at 1864.119 kb on + strand, within RALBFv3_RS22680 at 1864.120 kb on - strand, within RALBFv3_RS22680 at 1864.120 kb on - strand, within RALBFv3_RS22680 at 1864.413 kb on + strand, within RALBFv3_RS22680 at 1864.413 kb on + strand, within RALBFv3_RS22680 at 1864.413 kb on + strand, within RALBFv3_RS22680 at 1864.414 kb on - strand, within RALBFv3_RS22680 at 1864.414 kb on - strand, within RALBFv3_RS22680 at 1864.491 kb on + strand, within RALBFv3_RS22680 at 1864.491 kb on + strand, within RALBFv3_RS22680 at 1864.492 kb on - strand, within RALBFv3_RS22680 at 1864.492 kb on - strand, within RALBFv3_RS22680 at 1864.492 kb on - strand, within RALBFv3_RS22680 at 1864.558 kb on - strand at 1864.865 kb on + strand, within RALBFv3_RS22685 at 1864.865 kb on + strand, within RALBFv3_RS22685 at 1864.865 kb on + strand, within RALBFv3_RS22685 at 1864.866 kb on - strand, within RALBFv3_RS22685 at 1864.866 kb on - strand, within RALBFv3_RS22685 at 1864.866 kb on - strand, within RALBFv3_RS22685 at 1864.895 kb on + strand, within RALBFv3_RS22685 at 1864.895 kb on + strand, within RALBFv3_RS22685 at 1864.895 kb on + strand, within RALBFv3_RS22685 at 1864.895 kb on + strand, within RALBFv3_RS22685 at 1864.895 kb on + strand, within RALBFv3_RS22685 at 1864.896 kb on - strand, within RALBFv3_RS22685 at 1865.064 kb on - strand at 1865.064 kb on - strand at 1865.226 kb on + strand, within RALBFv3_RS22690 at 1865.227 kb on - strand, within RALBFv3_RS22690 at 1865.227 kb on - strand, within RALBFv3_RS22690 at 1865.542 kb on + strand at 1865.542 kb on + strand at 1865.543 kb on - strand at 1865.543 kb on - strand at 1865.543 kb on - strand at 1865.576 kb on + strand at 1865.674 kb on - strand at 1865.781 kb on + strand at 1865.781 kb on + strand at 1865.874 kb on + strand, within RALBFv3_RS22695 at 1865.874 kb on + strand, within RALBFv3_RS22695 at 1865.875 kb on - strand, within RALBFv3_RS22695 at 1865.875 kb on - strand, within RALBFv3_RS22695 at 1865.875 kb on - strand, within RALBFv3_RS22695 at 1865.875 kb on - strand, within RALBFv3_RS22695 at 1866.245 kb on + strand, within RALBFv3_RS22695 at 1866.257 kb on - strand, within RALBFv3_RS22695 at 1866.257 kb on - strand, within RALBFv3_RS22695 at 1866.257 kb on - strand, within RALBFv3_RS22695 at 1866.354 kb on + strand, within RALBFv3_RS22695 at 1866.384 kb on + strand, within RALBFv3_RS22695 at 1866.446 kb on + strand, within RALBFv3_RS22695 at 1866.448 kb on - strand, within RALBFv3_RS22695
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 1,864,119 + RALBFv3_RS22680 0.18 -0.4 1,864,119 + RALBFv3_RS22680 0.18 +0.6 1,864,119 + RALBFv3_RS22680 0.18 -0.1 1,864,120 - RALBFv3_RS22680 0.18 -1.8 1,864,120 - RALBFv3_RS22680 0.18 -0.5 1,864,413 + RALBFv3_RS22680 0.75 +0.0 1,864,413 + RALBFv3_RS22680 0.75 -0.4 1,864,413 + RALBFv3_RS22680 0.75 -0.2 1,864,414 - RALBFv3_RS22680 0.75 +0.1 1,864,414 - RALBFv3_RS22680 0.75 +0.2 1,864,491 + RALBFv3_RS22680 0.90 +0.5 1,864,491 + RALBFv3_RS22680 0.90 -0.2 1,864,492 - RALBFv3_RS22680 0.90 -0.1 1,864,492 - RALBFv3_RS22680 0.90 +0.8 1,864,492 - RALBFv3_RS22680 0.90 -0.2 1,864,558 - -2.5 1,864,865 + RALBFv3_RS22685 0.60 -0.1 1,864,865 + RALBFv3_RS22685 0.60 +2.0 1,864,865 + RALBFv3_RS22685 0.60 -0.2 1,864,866 - RALBFv3_RS22685 0.60 -0.4 1,864,866 - RALBFv3_RS22685 0.60 -0.8 1,864,866 - RALBFv3_RS22685 0.60 -1.0 1,864,895 + RALBFv3_RS22685 0.65 -0.2 1,864,895 + RALBFv3_RS22685 0.65 +0.8 1,864,895 + RALBFv3_RS22685 0.65 +0.7 1,864,895 + RALBFv3_RS22685 0.65 -0.3 1,864,895 + RALBFv3_RS22685 0.65 -0.7 1,864,896 - RALBFv3_RS22685 0.65 +0.1 1,865,064 - -0.5 1,865,064 - -0.9 1,865,226 + RALBFv3_RS22690 0.28 +0.5 1,865,227 - RALBFv3_RS22690 0.29 +0.2 1,865,227 - RALBFv3_RS22690 0.29 +0.5 1,865,542 + +0.8 1,865,542 + -0.1 1,865,543 - +0.1 1,865,543 - -0.5 1,865,543 - -0.5 1,865,576 + -1.0 1,865,674 - -0.0 1,865,781 + +0.3 1,865,781 + +0.3 1,865,874 + RALBFv3_RS22695 0.13 +0.4 1,865,874 + RALBFv3_RS22695 0.13 -0.4 1,865,875 - RALBFv3_RS22695 0.13 +0.8 1,865,875 - RALBFv3_RS22695 0.13 -1.0 1,865,875 - RALBFv3_RS22695 0.13 -0.1 1,865,875 - RALBFv3_RS22695 0.13 -0.6 1,866,245 + RALBFv3_RS22695 0.29 +1.0 1,866,257 - RALBFv3_RS22695 0.29 +0.8 1,866,257 - RALBFv3_RS22695 0.29 +0.3 1,866,257 - RALBFv3_RS22695 0.29 +0.4 1,866,354 + RALBFv3_RS22695 0.34 +0.3 1,866,384 + RALBFv3_RS22695 0.35 -0.7 1,866,446 + RALBFv3_RS22695 0.38 +0.7 1,866,448 - RALBFv3_RS22695 0.38 +1.0
Or see this region's nucleotide sequence