Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS22205 and RALBFv3_RS22210 are separated by 103 nucleotides RALBFv3_RS22210 and RALBFv3_RS22215 are separated by 14 nucleotides RALBFv3_RS22215 and RALBFv3_RS22220 are separated by 216 nucleotides
RALBFv3_RS22205: RALBFv3_RS22205 - PadR family transcriptional regulator, at 1,725,083 to 1,725,739
_RS22205
RALBFv3_RS22210: RALBFv3_RS22210 - siderophore-interacting protein, at 1,725,843 to 1,726,676
_RS22210
RALBFv3_RS22215: RALBFv3_RS22215 - hypothetical protein, at 1,726,691 to 1,726,945
_RS22215
RALBFv3_RS22220: RALBFv3_RS22220 - methyl-accepting chemotaxis protein, at 1,727,162 to 1,728,751
_RS22220
Position (kb) 1726
1727 Strain fitness (log2 ratio) -1
0
1 at 1726.086 kb on + strand, within RALBFv3_RS22210 at 1726.086 kb on + strand, within RALBFv3_RS22210 at 1726.086 kb on + strand, within RALBFv3_RS22210 at 1726.087 kb on - strand, within RALBFv3_RS22210 at 1726.088 kb on + strand, within RALBFv3_RS22210 at 1726.088 kb on + strand, within RALBFv3_RS22210 at 1726.088 kb on + strand, within RALBFv3_RS22210 at 1726.088 kb on + strand, within RALBFv3_RS22210 at 1726.089 kb on - strand, within RALBFv3_RS22210 at 1726.089 kb on - strand, within RALBFv3_RS22210 at 1726.089 kb on - strand, within RALBFv3_RS22210 at 1726.089 kb on - strand, within RALBFv3_RS22210 at 1726.400 kb on - strand, within RALBFv3_RS22210 at 1726.400 kb on - strand, within RALBFv3_RS22210 at 1726.400 kb on - strand, within RALBFv3_RS22210 at 1726.692 kb on + strand at 1726.758 kb on + strand, within RALBFv3_RS22215 at 1726.758 kb on + strand, within RALBFv3_RS22215 at 1726.759 kb on - strand, within RALBFv3_RS22215 at 1726.759 kb on - strand, within RALBFv3_RS22215 at 1726.832 kb on + strand, within RALBFv3_RS22215 at 1727.175 kb on + strand at 1727.216 kb on + strand at 1727.438 kb on + strand, within RALBFv3_RS22220 at 1727.438 kb on + strand, within RALBFv3_RS22220 at 1727.438 kb on + strand, within RALBFv3_RS22220 at 1727.438 kb on + strand, within RALBFv3_RS22220 at 1727.439 kb on - strand, within RALBFv3_RS22220 at 1727.549 kb on + strand, within RALBFv3_RS22220 at 1727.549 kb on + strand, within RALBFv3_RS22220 at 1727.550 kb on - strand, within RALBFv3_RS22220 at 1727.579 kb on + strand, within RALBFv3_RS22220 at 1727.579 kb on + strand, within RALBFv3_RS22220
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 1,726,086 + RALBFv3_RS22210 0.29 -0.4 1,726,086 + RALBFv3_RS22210 0.29 +0.1 1,726,086 + RALBFv3_RS22210 0.29 -1.1 1,726,087 - RALBFv3_RS22210 0.29 +1.0 1,726,088 + RALBFv3_RS22210 0.29 +0.0 1,726,088 + RALBFv3_RS22210 0.29 +0.3 1,726,088 + RALBFv3_RS22210 0.29 -0.2 1,726,088 + RALBFv3_RS22210 0.29 +0.1 1,726,089 - RALBFv3_RS22210 0.29 +0.3 1,726,089 - RALBFv3_RS22210 0.29 -0.6 1,726,089 - RALBFv3_RS22210 0.29 +0.2 1,726,089 - RALBFv3_RS22210 0.29 -0.4 1,726,400 - RALBFv3_RS22210 0.67 +0.2 1,726,400 - RALBFv3_RS22210 0.67 -0.0 1,726,400 - RALBFv3_RS22210 0.67 +0.6 1,726,692 + +1.6 1,726,758 + RALBFv3_RS22215 0.26 +0.4 1,726,758 + RALBFv3_RS22215 0.26 +0.8 1,726,759 - RALBFv3_RS22215 0.27 +1.4 1,726,759 - RALBFv3_RS22215 0.27 +0.0 1,726,832 + RALBFv3_RS22215 0.55 +0.2 1,727,175 + +0.1 1,727,216 + -0.3 1,727,438 + RALBFv3_RS22220 0.17 -0.2 1,727,438 + RALBFv3_RS22220 0.17 -0.4 1,727,438 + RALBFv3_RS22220 0.17 +0.2 1,727,438 + RALBFv3_RS22220 0.17 +0.3 1,727,439 - RALBFv3_RS22220 0.17 -0.5 1,727,549 + RALBFv3_RS22220 0.24 -0.0 1,727,549 + RALBFv3_RS22220 0.24 +0.3 1,727,550 - RALBFv3_RS22220 0.24 +0.1 1,727,579 + RALBFv3_RS22220 0.26 -0.7 1,727,579 + RALBFv3_RS22220 0.26 -0.3
Or see this region's nucleotide sequence