Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS20630

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS20615 and RALBFv3_RS20620 are separated by 112 nucleotidesRALBFv3_RS20620 and RALBFv3_RS20625 are separated by 205 nucleotidesRALBFv3_RS20625 and RALBFv3_RS20630 are separated by 23 nucleotidesRALBFv3_RS20630 and RALBFv3_RS24505 overlap by 4 nucleotidesRALBFv3_RS24505 and RALBFv3_RS20635 are separated by 396 nucleotides RALBFv3_RS20615: RALBFv3_RS20615 - hypothetical protein, at 1,323,939 to 1,324,556 _RS20615 RALBFv3_RS20620: RALBFv3_RS20620 - DUF2322 domain-containing protein, at 1,324,669 to 1,325,001 _RS20620 RALBFv3_RS20625: RALBFv3_RS20625 - hypothetical protein, at 1,325,207 to 1,325,515 _RS20625 RALBFv3_RS20630: RALBFv3_RS20630 - hypothetical protein, at 1,325,539 to 1,326,222 _RS20630 RALBFv3_RS24505: RALBFv3_RS24505 - PAAR domain-containing protein, at 1,326,219 to 1,326,761 _RS24505 RALBFv3_RS20635: RALBFv3_RS20635 - hypothetical protein, at 1,327,158 to 1,328,495 _RS20635 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -1 0 1 2at 1324.576 kb on - strandat 1324.853 kb on + strand, within RALBFv3_RS20620at 1324.854 kb on - strand, within RALBFv3_RS20620at 1324.854 kb on - strand, within RALBFv3_RS20620at 1324.854 kb on - strand, within RALBFv3_RS20620at 1324.854 kb on - strand, within RALBFv3_RS20620at 1324.981 kb on + strandat 1324.981 kb on + strandat 1324.981 kb on + strandat 1324.982 kb on - strandat 1325.043 kb on + strandat 1325.044 kb on + strandat 1325.044 kb on + strandat 1325.045 kb on - strandat 1325.049 kb on + strandat 1325.128 kb on + strandat 1325.129 kb on - strandat 1325.129 kb on - strandat 1325.129 kb on - strandat 1325.129 kb on - strandat 1325.129 kb on - strandat 1325.141 kb on - strandat 1325.159 kb on + strandat 1325.160 kb on - strandat 1325.160 kb on - strandat 1325.160 kb on - strandat 1325.249 kb on + strand, within RALBFv3_RS20625at 1325.249 kb on + strand, within RALBFv3_RS20625at 1325.250 kb on - strand, within RALBFv3_RS20625at 1325.285 kb on + strand, within RALBFv3_RS20625at 1325.285 kb on + strand, within RALBFv3_RS20625at 1325.285 kb on + strand, within RALBFv3_RS20625at 1325.285 kb on + strand, within RALBFv3_RS20625at 1325.285 kb on + strand, within RALBFv3_RS20625at 1325.285 kb on + strand, within RALBFv3_RS20625at 1325.285 kb on + strand, within RALBFv3_RS20625at 1325.285 kb on + strand, within RALBFv3_RS20625at 1325.286 kb on - strand, within RALBFv3_RS20625at 1325.286 kb on - strand, within RALBFv3_RS20625at 1325.286 kb on - strand, within RALBFv3_RS20625at 1325.352 kb on + strand, within RALBFv3_RS20625at 1325.352 kb on + strand, within RALBFv3_RS20625at 1325.352 kb on + strand, within RALBFv3_RS20625at 1325.353 kb on - strand, within RALBFv3_RS20625at 1325.353 kb on - strand, within RALBFv3_RS20625at 1325.353 kb on - strand, within RALBFv3_RS20625at 1325.447 kb on - strand, within RALBFv3_RS20625at 1325.457 kb on - strand, within RALBFv3_RS20625at 1325.457 kb on - strand, within RALBFv3_RS20625at 1325.486 kb on + strandat 1325.487 kb on - strandat 1325.574 kb on + strandat 1325.748 kb on - strand, within RALBFv3_RS20630at 1325.823 kb on + strand, within RALBFv3_RS20630at 1325.824 kb on - strand, within RALBFv3_RS20630at 1325.891 kb on + strand, within RALBFv3_RS20630at 1325.892 kb on - strand, within RALBFv3_RS20630at 1326.077 kb on + strand, within RALBFv3_RS20630at 1326.078 kb on - strand, within RALBFv3_RS20630at 1326.078 kb on - strand, within RALBFv3_RS20630at 1326.223 kb on - strandat 1326.223 kb on - strandat 1326.243 kb on + strandat 1326.271 kb on + strandat 1326.271 kb on + strandat 1326.271 kb on + strandat 1326.272 kb on - strandat 1326.272 kb on - strandat 1326.272 kb on - strandat 1326.286 kb on + strand, within RALBFv3_RS24505at 1326.286 kb on + strand, within RALBFv3_RS24505at 1326.287 kb on - strand, within RALBFv3_RS24505at 1326.287 kb on - strand, within RALBFv3_RS24505at 1326.287 kb on - strand, within RALBFv3_RS24505at 1326.287 kb on - strand, within RALBFv3_RS24505at 1326.290 kb on + strand, within RALBFv3_RS24505at 1326.307 kb on - strand, within RALBFv3_RS24505at 1326.338 kb on + strand, within RALBFv3_RS24505at 1326.338 kb on + strand, within RALBFv3_RS24505at 1326.339 kb on - strand, within RALBFv3_RS24505at 1326.339 kb on - strand, within RALBFv3_RS24505at 1326.339 kb on - strand, within RALBFv3_RS24505at 1326.339 kb on - strand, within RALBFv3_RS24505at 1326.339 kb on - strand, within RALBFv3_RS24505at 1326.361 kb on + strand, within RALBFv3_RS24505at 1326.362 kb on - strand, within RALBFv3_RS24505at 1326.362 kb on - strand, within RALBFv3_RS24505at 1326.362 kb on - strand, within RALBFv3_RS24505at 1326.364 kb on + strand, within RALBFv3_RS24505at 1326.364 kb on + strand, within RALBFv3_RS24505at 1326.364 kb on + strand, within RALBFv3_RS24505at 1326.550 kb on + strand, within RALBFv3_RS24505at 1326.550 kb on + strand, within RALBFv3_RS24505at 1326.550 kb on + strand, within RALBFv3_RS24505at 1326.551 kb on - strand, within RALBFv3_RS24505at 1326.551 kb on - strand, within RALBFv3_RS24505at 1326.551 kb on - strand, within RALBFv3_RS24505at 1326.551 kb on - strand, within RALBFv3_RS24505at 1326.632 kb on + strand, within RALBFv3_RS24505at 1326.633 kb on - strand, within RALBFv3_RS24505at 1326.658 kb on + strand, within RALBFv3_RS24505at 1326.658 kb on + strand, within RALBFv3_RS24505at 1326.658 kb on + strand, within RALBFv3_RS24505at 1326.658 kb on + strand, within RALBFv3_RS24505at 1326.658 kb on + strand, within RALBFv3_RS24505at 1326.659 kb on - strand, within RALBFv3_RS24505at 1326.659 kb on - strand, within RALBFv3_RS24505at 1326.742 kb on - strandat 1326.774 kb on + strandat 1326.774 kb on + strandat 1326.774 kb on + strandat 1326.775 kb on - strandat 1326.775 kb on - strandat 1326.776 kb on + strandat 1326.776 kb on + strandat 1326.776 kb on + strandat 1326.777 kb on - strandat 1326.777 kb on - strandat 1326.777 kb on - strandat 1326.845 kb on - strandat 1326.846 kb on + strandat 1326.847 kb on - strandat 1326.895 kb on - strandat 1326.906 kb on + strandat 1327.004 kb on + strandat 1327.004 kb on + strandat 1327.005 kb on - strandat 1327.063 kb on + strandat 1327.064 kb on - strandat 1327.093 kb on + strandat 1327.107 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,324,576 - +0.7
1,324,853 + RALBFv3_RS20620 0.55 +0.1
1,324,854 - RALBFv3_RS20620 0.56 -1.5
1,324,854 - RALBFv3_RS20620 0.56 +1.5
1,324,854 - RALBFv3_RS20620 0.56 +0.6
1,324,854 - RALBFv3_RS20620 0.56 -0.5
1,324,981 + +0.2
1,324,981 + +0.9
1,324,981 + +1.5
1,324,982 - -1.1
1,325,043 + +0.4
1,325,044 + +0.6
1,325,044 + -0.1
1,325,045 - +0.1
1,325,049 + -0.1
1,325,128 + -0.0
1,325,129 - +1.5
1,325,129 - +0.2
1,325,129 - +0.0
1,325,129 - +0.9
1,325,129 - -0.1
1,325,141 - +0.2
1,325,159 + +0.1
1,325,160 - -0.4
1,325,160 - +0.1
1,325,160 - +0.7
1,325,249 + RALBFv3_RS20625 0.14 -0.5
1,325,249 + RALBFv3_RS20625 0.14 -0.2
1,325,250 - RALBFv3_RS20625 0.14 +0.4
1,325,285 + RALBFv3_RS20625 0.25 +0.4
1,325,285 + RALBFv3_RS20625 0.25 +0.7
1,325,285 + RALBFv3_RS20625 0.25 -0.5
1,325,285 + RALBFv3_RS20625 0.25 -0.8
1,325,285 + RALBFv3_RS20625 0.25 +1.2
1,325,285 + RALBFv3_RS20625 0.25 +0.1
1,325,285 + RALBFv3_RS20625 0.25 +0.2
1,325,285 + RALBFv3_RS20625 0.25 -0.3
1,325,286 - RALBFv3_RS20625 0.26 -0.2
1,325,286 - RALBFv3_RS20625 0.26 +0.8
1,325,286 - RALBFv3_RS20625 0.26 -0.8
1,325,352 + RALBFv3_RS20625 0.47 -0.0
1,325,352 + RALBFv3_RS20625 0.47 +0.4
1,325,352 + RALBFv3_RS20625 0.47 +0.2
1,325,353 - RALBFv3_RS20625 0.47 -0.5
1,325,353 - RALBFv3_RS20625 0.47 +0.9
1,325,353 - RALBFv3_RS20625 0.47 +0.2
1,325,447 - RALBFv3_RS20625 0.78 +0.1
1,325,457 - RALBFv3_RS20625 0.81 -0.2
1,325,457 - RALBFv3_RS20625 0.81 -0.6
1,325,486 + +1.2
1,325,487 - +0.3
1,325,574 + +0.3
1,325,748 - RALBFv3_RS20630 0.31 -0.2
1,325,823 + RALBFv3_RS20630 0.42 +0.1
1,325,824 - RALBFv3_RS20630 0.42 +0.4
1,325,891 + RALBFv3_RS20630 0.51 +0.6
1,325,892 - RALBFv3_RS20630 0.52 +0.4
1,326,077 + RALBFv3_RS20630 0.79 +0.5
1,326,078 - RALBFv3_RS20630 0.79 +1.6
1,326,078 - RALBFv3_RS20630 0.79 -0.4
1,326,223 - -0.1
1,326,223 - -0.4
1,326,243 + +0.6
1,326,271 + -0.4
1,326,271 + +0.2
1,326,271 + -0.6
1,326,272 - -0.2
1,326,272 - -0.5
1,326,272 - +0.1
1,326,286 + RALBFv3_RS24505 0.12 +0.1
1,326,286 + RALBFv3_RS24505 0.12 -0.1
1,326,287 - RALBFv3_RS24505 0.13 -0.1
1,326,287 - RALBFv3_RS24505 0.13 +1.2
1,326,287 - RALBFv3_RS24505 0.13 -1.1
1,326,287 - RALBFv3_RS24505 0.13 +0.1
1,326,290 + RALBFv3_RS24505 0.13 -0.6
1,326,307 - RALBFv3_RS24505 0.16 -0.7
1,326,338 + RALBFv3_RS24505 0.22 -0.0
1,326,338 + RALBFv3_RS24505 0.22 +0.4
1,326,339 - RALBFv3_RS24505 0.22 -0.5
1,326,339 - RALBFv3_RS24505 0.22 +0.0
1,326,339 - RALBFv3_RS24505 0.22 -0.4
1,326,339 - RALBFv3_RS24505 0.22 -0.0
1,326,339 - RALBFv3_RS24505 0.22 -0.6
1,326,361 + RALBFv3_RS24505 0.26 -0.4
1,326,362 - RALBFv3_RS24505 0.26 +0.7
1,326,362 - RALBFv3_RS24505 0.26 +1.2
1,326,362 - RALBFv3_RS24505 0.26 -0.1
1,326,364 + RALBFv3_RS24505 0.27 +0.4
1,326,364 + RALBFv3_RS24505 0.27 +0.1
1,326,364 + RALBFv3_RS24505 0.27 -0.4
1,326,550 + RALBFv3_RS24505 0.61 +0.4
1,326,550 + RALBFv3_RS24505 0.61 -0.3
1,326,550 + RALBFv3_RS24505 0.61 -1.0
1,326,551 - RALBFv3_RS24505 0.61 -0.2
1,326,551 - RALBFv3_RS24505 0.61 +0.1
1,326,551 - RALBFv3_RS24505 0.61 +0.3
1,326,551 - RALBFv3_RS24505 0.61 -0.3
1,326,632 + RALBFv3_RS24505 0.76 -1.1
1,326,633 - RALBFv3_RS24505 0.76 +0.5
1,326,658 + RALBFv3_RS24505 0.81 -0.9
1,326,658 + RALBFv3_RS24505 0.81 -0.4
1,326,658 + RALBFv3_RS24505 0.81 +0.9
1,326,658 + RALBFv3_RS24505 0.81 -0.2
1,326,658 + RALBFv3_RS24505 0.81 +2.2
1,326,659 - RALBFv3_RS24505 0.81 +0.4
1,326,659 - RALBFv3_RS24505 0.81 -0.5
1,326,742 - +0.1
1,326,774 + +0.4
1,326,774 + +0.1
1,326,774 + +0.2
1,326,775 - -0.4
1,326,775 - -0.1
1,326,776 + -0.1
1,326,776 + +0.3
1,326,776 + -0.1
1,326,777 - -1.1
1,326,777 - -0.7
1,326,777 - -0.4
1,326,845 - -0.2
1,326,846 + +0.9
1,326,847 - +0.6
1,326,895 - +0.4
1,326,906 + +0.4
1,327,004 + -0.5
1,327,004 + -0.8
1,327,005 - +0.2
1,327,063 + -0.2
1,327,064 - +0.1
1,327,093 + -0.5
1,327,107 + +0.7

Or see this region's nucleotide sequence