Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS19685

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS19680 and RALBFv3_RS19685 are separated by 115 nucleotidesRALBFv3_RS19685 and RALBFv3_RS19690 are separated by 495 nucleotides RALBFv3_RS19680: RALBFv3_RS19680 - methyl-accepting chemotaxis protein, at 1,092,438 to 1,093,994 _RS19680 RALBFv3_RS19685: RALBFv3_RS19685 - hypothetical protein, at 1,094,110 to 1,094,538 _RS19685 RALBFv3_RS19690: RALBFv3_RS19690 - hypothetical protein, at 1,095,034 to 1,095,579 _RS19690 Position (kb) 1094 1095Strain fitness (log2 ratio) -1 0 1at 1094.449 kb on - strand, within RALBFv3_RS19685at 1094.498 kb on + strandat 1094.499 kb on - strandat 1094.636 kb on + strandat 1094.731 kb on + strandat 1094.731 kb on + strandat 1094.762 kb on + strandat 1094.762 kb on + strandat 1094.762 kb on + strandat 1094.762 kb on + strandat 1094.762 kb on + strandat 1094.763 kb on - strandat 1094.763 kb on - strandat 1094.763 kb on - strandat 1094.763 kb on - strandat 1094.961 kb on - strandat 1095.000 kb on + strandat 1095.001 kb on - strandat 1095.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,094,449 - RALBFv3_RS19685 0.79 +0.4
1,094,498 + -0.7
1,094,499 - +0.1
1,094,636 + -0.3
1,094,731 + +0.3
1,094,731 + +0.9
1,094,762 + -0.9
1,094,762 + -0.4
1,094,762 + -0.1
1,094,762 + -1.1
1,094,762 + -1.1
1,094,763 - -0.3
1,094,763 - +0.1
1,094,763 - -0.6
1,094,763 - +0.4
1,094,961 - -0.1
1,095,000 + -0.4
1,095,001 - +0.3
1,095,530 - -0.4

Or see this region's nucleotide sequence