Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS19390

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS19390 and RALBFv3_RS19395 are separated by 124 nucleotides RALBFv3_RS19390: RALBFv3_RS19390 - XRE family transcriptional regulator, at 1,019,256 to 1,019,861 _RS19390 RALBFv3_RS19395: RALBFv3_RS19395 - glycine C-acetyltransferase, at 1,019,986 to 1,021,185 _RS19395 Position (kb) 1019 1020Strain fitness (log2 ratio) -1 0 1 2at 1018.383 kb on + strandat 1018.384 kb on - strandat 1018.640 kb on + strandat 1018.640 kb on + strandat 1018.641 kb on - strandat 1019.033 kb on - strandat 1019.162 kb on + strandat 1019.338 kb on + strand, within RALBFv3_RS19390at 1019.339 kb on - strand, within RALBFv3_RS19390at 1019.486 kb on - strand, within RALBFv3_RS19390at 1019.544 kb on - strand, within RALBFv3_RS19390at 1020.007 kb on + strandat 1020.007 kb on + strandat 1020.007 kb on + strandat 1020.008 kb on - strandat 1020.008 kb on - strandat 1020.145 kb on + strand, within RALBFv3_RS19395at 1020.146 kb on - strand, within RALBFv3_RS19395at 1020.146 kb on - strand, within RALBFv3_RS19395at 1020.803 kb on - strand, within RALBFv3_RS19395at 1020.816 kb on + strand, within RALBFv3_RS19395

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,018,383 + +0.5
1,018,384 - +1.9
1,018,640 + +0.6
1,018,640 + -0.4
1,018,641 - +0.3
1,019,033 - +0.6
1,019,162 + -0.8
1,019,338 + RALBFv3_RS19390 0.14 +0.6
1,019,339 - RALBFv3_RS19390 0.14 +1.5
1,019,486 - RALBFv3_RS19390 0.38 -1.1
1,019,544 - RALBFv3_RS19390 0.48 +1.2
1,020,007 + -0.6
1,020,007 + -1.1
1,020,007 + -0.5
1,020,008 - -0.4
1,020,008 - +0.1
1,020,145 + RALBFv3_RS19395 0.13 +0.6
1,020,146 - RALBFv3_RS19395 0.13 +0.1
1,020,146 - RALBFv3_RS19395 0.13 +0.2
1,020,803 - RALBFv3_RS19395 0.68 -1.4
1,020,816 + RALBFv3_RS19395 0.69 +2.2

Or see this region's nucleotide sequence