Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19260 and RALBFv3_RS19265 overlap by 11 nucleotides RALBFv3_RS19265 and RALBFv3_RS19270 are separated by 226 nucleotides
RALBFv3_RS19260: RALBFv3_RS19260 - lipoprotein, at 908,380 to 909,441
_RS19260
RALBFv3_RS19265: RALBFv3_RS19265 - TlpA family protein disulfide reductase, at 909,431 to 909,985
_RS19265
RALBFv3_RS19270: RALBFv3_RS19270 - voltage-gated chloride channel protein, at 910,212 to 911,546
_RS19270
Position (kb) 909
910 Strain fitness (log2 ratio) -2
-1
0
1
2 at 908.551 kb on + strand, within RALBFv3_RS19260 at 908.552 kb on - strand, within RALBFv3_RS19260 at 908.552 kb on - strand, within RALBFv3_RS19260 at 908.554 kb on - strand, within RALBFv3_RS19260 at 908.666 kb on - strand, within RALBFv3_RS19260 at 908.667 kb on + strand, within RALBFv3_RS19260 at 908.667 kb on + strand, within RALBFv3_RS19260 at 908.668 kb on - strand, within RALBFv3_RS19260 at 908.686 kb on + strand, within RALBFv3_RS19260 at 908.727 kb on + strand, within RALBFv3_RS19260 at 908.728 kb on + strand, within RALBFv3_RS19260 at 908.752 kb on + strand, within RALBFv3_RS19260 at 908.842 kb on + strand, within RALBFv3_RS19260 at 908.842 kb on + strand, within RALBFv3_RS19260 at 908.843 kb on - strand, within RALBFv3_RS19260 at 908.843 kb on - strand, within RALBFv3_RS19260 at 908.908 kb on + strand, within RALBFv3_RS19260 at 909.052 kb on + strand, within RALBFv3_RS19260 at 909.053 kb on - strand, within RALBFv3_RS19260 at 909.055 kb on + strand, within RALBFv3_RS19260 at 909.055 kb on + strand, within RALBFv3_RS19260 at 909.056 kb on - strand, within RALBFv3_RS19260 at 909.058 kb on + strand, within RALBFv3_RS19260 at 909.058 kb on + strand, within RALBFv3_RS19260 at 909.059 kb on - strand, within RALBFv3_RS19260 at 909.059 kb on - strand, within RALBFv3_RS19260 at 909.191 kb on - strand, within RALBFv3_RS19260 at 909.216 kb on + strand, within RALBFv3_RS19260 at 909.371 kb on - strand at 909.371 kb on - strand at 909.593 kb on - strand, within RALBFv3_RS19265 at 909.707 kb on + strand, within RALBFv3_RS19265 at 909.859 kb on - strand, within RALBFv3_RS19265 at 910.052 kb on - strand at 910.354 kb on + strand, within RALBFv3_RS19270 at 910.382 kb on - strand, within RALBFv3_RS19270 at 910.533 kb on + strand, within RALBFv3_RS19270 at 910.570 kb on + strand, within RALBFv3_RS19270 at 910.571 kb on - strand, within RALBFv3_RS19270 at 910.651 kb on + strand, within RALBFv3_RS19270 at 910.708 kb on + strand, within RALBFv3_RS19270
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 908,551 + RALBFv3_RS19260 0.16 -1.1 908,552 - RALBFv3_RS19260 0.16 +0.2 908,552 - RALBFv3_RS19260 0.16 -0.2 908,554 - RALBFv3_RS19260 0.16 -0.1 908,666 - RALBFv3_RS19260 0.27 +0.5 908,667 + RALBFv3_RS19260 0.27 +1.6 908,667 + RALBFv3_RS19260 0.27 -0.3 908,668 - RALBFv3_RS19260 0.27 -0.7 908,686 + RALBFv3_RS19260 0.29 -0.9 908,727 + RALBFv3_RS19260 0.33 -0.2 908,728 + RALBFv3_RS19260 0.33 -0.0 908,752 + RALBFv3_RS19260 0.35 +1.5 908,842 + RALBFv3_RS19260 0.44 -0.6 908,842 + RALBFv3_RS19260 0.44 +0.4 908,843 - RALBFv3_RS19260 0.44 +0.2 908,843 - RALBFv3_RS19260 0.44 +2.2 908,908 + RALBFv3_RS19260 0.50 +0.3 909,052 + RALBFv3_RS19260 0.63 -0.1 909,053 - RALBFv3_RS19260 0.63 -0.2 909,055 + RALBFv3_RS19260 0.64 -0.1 909,055 + RALBFv3_RS19260 0.64 +0.9 909,056 - RALBFv3_RS19260 0.64 -1.1 909,058 + RALBFv3_RS19260 0.64 +0.5 909,058 + RALBFv3_RS19260 0.64 -0.1 909,059 - RALBFv3_RS19260 0.64 -0.8 909,059 - RALBFv3_RS19260 0.64 +0.1 909,191 - RALBFv3_RS19260 0.76 +0.8 909,216 + RALBFv3_RS19260 0.79 -1.9 909,371 - +0.1 909,371 - +0.5 909,593 - RALBFv3_RS19265 0.29 +0.9 909,707 + RALBFv3_RS19265 0.50 -1.4 909,859 - RALBFv3_RS19265 0.77 +0.7 910,052 - -0.1 910,354 + RALBFv3_RS19270 0.11 -0.0 910,382 - RALBFv3_RS19270 0.13 +1.5 910,533 + RALBFv3_RS19270 0.24 -2.4 910,570 + RALBFv3_RS19270 0.27 -0.5 910,571 - RALBFv3_RS19270 0.27 -0.6 910,651 + RALBFv3_RS19270 0.33 -0.6 910,708 + RALBFv3_RS19270 0.37 +1.3
Or see this region's nucleotide sequence