Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19240 and RALBFv3_RS19245 overlap by 4 nucleotides RALBFv3_RS19245 and RALBFv3_RS19250 are separated by 27 nucleotides
RALBFv3_RS19240: RALBFv3_RS19240 - hypothetical protein, at 903,909 to 905,105
_RS19240
RALBFv3_RS19245: RALBFv3_RS19245 - hypothetical protein, at 905,102 to 905,563
_RS19245
RALBFv3_RS19250: RALBFv3_RS19250 - ligand-gated channel, at 905,591 to 907,507
_RS19250
Position (kb) 905
906 Strain fitness (log2 ratio) -1
0
1 at 904.347 kb on + strand, within RALBFv3_RS19240 at 904.562 kb on + strand, within RALBFv3_RS19240 at 904.563 kb on - strand, within RALBFv3_RS19240 at 904.563 kb on - strand, within RALBFv3_RS19240 at 904.563 kb on - strand, within RALBFv3_RS19240 at 904.884 kb on + strand, within RALBFv3_RS19240 at 905.137 kb on - strand at 905.232 kb on - strand, within RALBFv3_RS19245 at 905.232 kb on - strand, within RALBFv3_RS19245 at 905.232 kb on - strand, within RALBFv3_RS19245 at 905.285 kb on + strand, within RALBFv3_RS19245 at 905.651 kb on + strand at 905.832 kb on - strand, within RALBFv3_RS19250 at 905.924 kb on + strand, within RALBFv3_RS19250 at 905.925 kb on - strand, within RALBFv3_RS19250 at 905.946 kb on - strand, within RALBFv3_RS19250 at 906.015 kb on - strand, within RALBFv3_RS19250 at 906.183 kb on - strand, within RALBFv3_RS19250 at 906.183 kb on - strand, within RALBFv3_RS19250 at 906.183 kb on - strand, within RALBFv3_RS19250 at 906.311 kb on + strand, within RALBFv3_RS19250 at 906.311 kb on + strand, within RALBFv3_RS19250 at 906.311 kb on + strand, within RALBFv3_RS19250 at 906.377 kb on + strand, within RALBFv3_RS19250 at 906.453 kb on - strand, within RALBFv3_RS19250 at 906.453 kb on - strand, within RALBFv3_RS19250
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 904,347 + RALBFv3_RS19240 0.37 -0.0 904,562 + RALBFv3_RS19240 0.55 +0.1 904,563 - RALBFv3_RS19240 0.55 -1.5 904,563 - RALBFv3_RS19240 0.55 -0.1 904,563 - RALBFv3_RS19240 0.55 +0.6 904,884 + RALBFv3_RS19240 0.81 -1.1 905,137 - +0.8 905,232 - RALBFv3_RS19245 0.28 +0.4 905,232 - RALBFv3_RS19245 0.28 +0.4 905,232 - RALBFv3_RS19245 0.28 +1.0 905,285 + RALBFv3_RS19245 0.40 +0.4 905,651 + -0.4 905,832 - RALBFv3_RS19250 0.13 +0.8 905,924 + RALBFv3_RS19250 0.17 +1.1 905,925 - RALBFv3_RS19250 0.17 +0.6 905,946 - RALBFv3_RS19250 0.19 -0.4 906,015 - RALBFv3_RS19250 0.22 -1.1 906,183 - RALBFv3_RS19250 0.31 -0.1 906,183 - RALBFv3_RS19250 0.31 -0.5 906,183 - RALBFv3_RS19250 0.31 +0.4 906,311 + RALBFv3_RS19250 0.38 -0.3 906,311 + RALBFv3_RS19250 0.38 +0.0 906,311 + RALBFv3_RS19250 0.38 +0.2 906,377 + RALBFv3_RS19250 0.41 -1.0 906,453 - RALBFv3_RS19250 0.45 -0.1 906,453 - RALBFv3_RS19250 0.45 -0.1
Or see this region's nucleotide sequence