Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19065 and RALBFv3_RS19070 are separated by 427 nucleotides RALBFv3_RS19070 and RALBFv3_RS19075 are separated by 830 nucleotides
RALBFv3_RS19065: RALBFv3_RS19065 - type III effector protein, at 849,978 to 851,189
_RS19065
RALBFv3_RS19070: RALBFv3_RS19070 - hypothetical protein, at 851,617 to 851,889
_RS19070
RALBFv3_RS19075: RALBFv3_RS19075 - multidrug MFS transporter, at 852,720 to 853,853
_RS19075
Position (kb) 851
852 Strain fitness (log2 ratio) -2
-1
0
1
2 at 850.679 kb on + strand, within RALBFv3_RS19065 at 850.691 kb on - strand, within RALBFv3_RS19065 at 850.786 kb on + strand, within RALBFv3_RS19065 at 850.819 kb on + strand, within RALBFv3_RS19065 at 850.820 kb on - strand, within RALBFv3_RS19065 at 851.221 kb on + strand at 851.693 kb on - strand, within RALBFv3_RS19070 at 851.711 kb on - strand, within RALBFv3_RS19070 at 851.711 kb on - strand, within RALBFv3_RS19070 at 851.711 kb on - strand, within RALBFv3_RS19070 at 851.887 kb on + strand at 852.105 kb on - strand at 852.124 kb on + strand at 852.125 kb on - strand at 852.125 kb on - strand at 852.220 kb on + strand at 852.347 kb on - strand at 852.585 kb on - strand at 852.625 kb on + strand at 852.626 kb on - strand at 852.626 kb on - strand at 852.727 kb on + strand at 852.727 kb on + strand at 852.728 kb on - strand at 852.872 kb on + strand, within RALBFv3_RS19075 at 852.872 kb on + strand, within RALBFv3_RS19075 at 852.872 kb on + strand, within RALBFv3_RS19075 at 852.873 kb on - strand, within RALBFv3_RS19075 at 852.873 kb on - strand, within RALBFv3_RS19075
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 850,679 + RALBFv3_RS19065 0.58 -0.1 850,691 - RALBFv3_RS19065 0.59 -1.7 850,786 + RALBFv3_RS19065 0.67 +0.0 850,819 + RALBFv3_RS19065 0.69 -0.0 850,820 - RALBFv3_RS19065 0.69 +0.0 851,221 + +0.1 851,693 - RALBFv3_RS19070 0.28 +1.5 851,711 - RALBFv3_RS19070 0.34 +1.9 851,711 - RALBFv3_RS19070 0.34 +0.8 851,711 - RALBFv3_RS19070 0.34 +2.7 851,887 + +0.2 852,105 - -0.4 852,124 + +0.5 852,125 - +0.1 852,125 - -0.1 852,220 + -0.0 852,347 - +0.4 852,585 - -1.3 852,625 + -0.7 852,626 - -0.6 852,626 - -1.1 852,727 + -0.7 852,727 + -1.7 852,728 - -0.2 852,872 + RALBFv3_RS19075 0.13 +0.5 852,872 + RALBFv3_RS19075 0.13 -1.0 852,872 + RALBFv3_RS19075 0.13 -2.2 852,873 - RALBFv3_RS19075 0.13 +0.0 852,873 - RALBFv3_RS19075 0.13 -0.3
Or see this region's nucleotide sequence