Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS19020

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS19015 and RALBFv3_RS19020 are separated by 337 nucleotidesRALBFv3_RS19020 and RALBFv3_RS19025 are separated by 238 nucleotides RALBFv3_RS19015: RALBFv3_RS19015 - hypothetical protein, at 833,527 to 833,970 _RS19015 RALBFv3_RS19020: RALBFv3_RS19020 - AraC family transcriptional regulator, at 834,308 to 835,267 _RS19020 RALBFv3_RS19025: RALBFv3_RS19025 - hypothetical protein, at 835,506 to 837,665 _RS19025 Position (kb) 834 835 836Strain fitness (log2 ratio) -1 0 1at 833.783 kb on + strand, within RALBFv3_RS19015at 833.783 kb on + strand, within RALBFv3_RS19015at 833.784 kb on - strand, within RALBFv3_RS19015at 833.784 kb on - strand, within RALBFv3_RS19015at 833.784 kb on - strand, within RALBFv3_RS19015at 833.784 kb on - strand, within RALBFv3_RS19015at 834.267 kb on - strandat 834.593 kb on + strand, within RALBFv3_RS19020at 834.594 kb on - strand, within RALBFv3_RS19020at 834.594 kb on - strand, within RALBFv3_RS19020at 834.966 kb on + strand, within RALBFv3_RS19020at 834.966 kb on + strand, within RALBFv3_RS19020at 834.967 kb on - strand, within RALBFv3_RS19020at 835.917 kb on + strand, within RALBFv3_RS19025at 835.918 kb on - strand, within RALBFv3_RS19025at 836.051 kb on + strand, within RALBFv3_RS19025

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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833,783 + RALBFv3_RS19015 0.58 +0.1
833,783 + RALBFv3_RS19015 0.58 +0.9
833,784 - RALBFv3_RS19015 0.58 +0.5
833,784 - RALBFv3_RS19015 0.58 -0.6
833,784 - RALBFv3_RS19015 0.58 +0.9
833,784 - RALBFv3_RS19015 0.58 -0.2
834,267 - +0.1
834,593 + RALBFv3_RS19020 0.30 +1.0
834,594 - RALBFv3_RS19020 0.30 -0.6
834,594 - RALBFv3_RS19020 0.30 +0.6
834,966 + RALBFv3_RS19020 0.69 +0.7
834,966 + RALBFv3_RS19020 0.69 +0.9
834,967 - RALBFv3_RS19020 0.69 +0.6
835,917 + RALBFv3_RS19025 0.19 -0.2
835,918 - RALBFv3_RS19025 0.19 +0.3
836,051 + RALBFv3_RS19025 0.25 +0.4

Or see this region's nucleotide sequence