Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18850 and RALBFv3_RS18855 are separated by 302 nucleotides RALBFv3_RS18855 and RALBFv3_RS18860 overlap by 4 nucleotides
RALBFv3_RS18850: RALBFv3_RS18850 - transglutaminase family protein, at 777,512 to 778,411
_RS18850
RALBFv3_RS18855: RALBFv3_RS18855 - 2-haloalkanoic acid dehalogenase, at 778,714 to 779,412
_RS18855
RALBFv3_RS18860: RALBFv3_RS18860 - amidohydrolase, at 779,409 to 780,590
_RS18860
Position (kb) 778
779
780 Strain fitness (log2 ratio) -1
0
1 at 777.935 kb on + strand, within RALBFv3_RS18850 at 777.936 kb on - strand, within RALBFv3_RS18850 at 778.020 kb on - strand, within RALBFv3_RS18850 at 778.145 kb on + strand, within RALBFv3_RS18850 at 778.322 kb on + strand at 778.322 kb on + strand at 778.635 kb on - strand at 778.639 kb on + strand at 778.640 kb on - strand at 778.640 kb on - strand at 778.640 kb on - strand at 778.792 kb on + strand, within RALBFv3_RS18855 at 778.793 kb on - strand, within RALBFv3_RS18855 at 779.173 kb on + strand, within RALBFv3_RS18855 at 779.789 kb on + strand, within RALBFv3_RS18860 at 779.790 kb on - strand, within RALBFv3_RS18860 at 780.068 kb on + strand, within RALBFv3_RS18860 at 780.068 kb on + strand, within RALBFv3_RS18860 at 780.068 kb on + strand, within RALBFv3_RS18860 at 780.069 kb on - strand, within RALBFv3_RS18860 at 780.294 kb on + strand, within RALBFv3_RS18860 at 780.297 kb on + strand, within RALBFv3_RS18860
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 777,935 + RALBFv3_RS18850 0.47 +1.2 777,936 - RALBFv3_RS18850 0.47 +0.3 778,020 - RALBFv3_RS18850 0.56 -0.6 778,145 + RALBFv3_RS18850 0.70 -0.6 778,322 + +0.5 778,322 + -0.3 778,635 - -0.3 778,639 + +0.6 778,640 - +0.8 778,640 - -0.3 778,640 - +0.9 778,792 + RALBFv3_RS18855 0.11 +0.5 778,793 - RALBFv3_RS18855 0.11 -0.2 779,173 + RALBFv3_RS18855 0.66 +0.8 779,789 + RALBFv3_RS18860 0.32 -0.3 779,790 - RALBFv3_RS18860 0.32 -0.4 780,068 + RALBFv3_RS18860 0.56 -1.1 780,068 + RALBFv3_RS18860 0.56 +1.5 780,068 + RALBFv3_RS18860 0.56 +0.4 780,069 - RALBFv3_RS18860 0.56 -0.2 780,294 + RALBFv3_RS18860 0.75 -0.1 780,297 + RALBFv3_RS18860 0.75 -0.3
Or see this region's nucleotide sequence