Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS18435

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS18430 and RALBFv3_RS18435 are separated by 165 nucleotidesRALBFv3_RS18435 and RALBFv3_RS18440 are separated by 50 nucleotides RALBFv3_RS18430: RALBFv3_RS18430 - integrase, at 660,787 to 661,758 _RS18430 RALBFv3_RS18435: RALBFv3_RS18435 - UDP-glucose 4-epimerase GalE, at 661,924 to 662,949 _RS18435 RALBFv3_RS18440: RALBFv3_RS18440 - sensor histidine kinase, at 663,000 to 664,448 _RS18440 Position (kb) 661 662 663Strain fitness (log2 ratio) -1 0 1 2at 661.393 kb on + strand, within RALBFv3_RS18430at 661.714 kb on + strandat 661.715 kb on - strandat 661.715 kb on - strandat 661.756 kb on + strandat 661.757 kb on - strandat 661.804 kb on + strandat 661.804 kb on + strandat 662.219 kb on - strand, within RALBFv3_RS18435at 662.726 kb on - strand, within RALBFv3_RS18435at 662.873 kb on - strandat 663.219 kb on + strand, within RALBFv3_RS18440at 663.355 kb on + strand, within RALBFv3_RS18440

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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661,393 + RALBFv3_RS18430 0.62 +1.7
661,714 + -0.1
661,715 - -1.1
661,715 - -0.3
661,756 + -0.4
661,757 - +0.2
661,804 + +0.3
661,804 + -0.5
662,219 - RALBFv3_RS18435 0.29 +2.4
662,726 - RALBFv3_RS18435 0.78 -1.7
662,873 - -1.1
663,219 + RALBFv3_RS18440 0.15 +0.4
663,355 + RALBFv3_RS18440 0.24 +0.9

Or see this region's nucleotide sequence