Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18410 and RALBFv3_RS18415 are separated by 153 nucleotides RALBFv3_RS18415 and RALBFv3_RS18420 are separated by 57 nucleotides RALBFv3_RS18420 and RALBFv3_RS18425 overlap by 4 nucleotides
RALBFv3_RS18410: RALBFv3_RS18410 - organic hydroperoxide resistance protein, at 656,619 to 657,044
_RS18410
RALBFv3_RS18415: RALBFv3_RS18415 - MarR family transcriptional regulator, at 657,198 to 657,668
_RS18415
RALBFv3_RS18420: RALBFv3_RS18420 - alpha,alpha-trehalose-phosphate synthase (UDP-forming), at 657,726 to 659,123
_RS18420
RALBFv3_RS18425: RALBFv3_RS18425 - trehalose-phosphatase, at 659,120 to 659,908
_RS18425
Position (kb) 657
658
659
660 Strain fitness (log2 ratio) -2
-1
0
1
2 at 657.059 kb on + strand at 657.059 kb on + strand at 657.060 kb on - strand at 657.562 kb on - strand, within RALBFv3_RS18415 at 657.562 kb on - strand, within RALBFv3_RS18415 at 657.562 kb on - strand, within RALBFv3_RS18415 at 657.562 kb on - strand, within RALBFv3_RS18415 at 657.653 kb on + strand at 657.654 kb on - strand at 657.654 kb on - strand at 657.988 kb on + strand, within RALBFv3_RS18420 at 657.989 kb on - strand, within RALBFv3_RS18420 at 657.989 kb on - strand, within RALBFv3_RS18420 at 657.989 kb on - strand, within RALBFv3_RS18420 at 657.989 kb on - strand, within RALBFv3_RS18420 at 657.989 kb on - strand, within RALBFv3_RS18420 at 658.033 kb on + strand, within RALBFv3_RS18420 at 658.081 kb on + strand, within RALBFv3_RS18420 at 658.081 kb on + strand, within RALBFv3_RS18420 at 658.082 kb on - strand, within RALBFv3_RS18420 at 658.181 kb on - strand, within RALBFv3_RS18420 at 658.304 kb on - strand, within RALBFv3_RS18420 at 658.531 kb on + strand, within RALBFv3_RS18420 at 658.531 kb on + strand, within RALBFv3_RS18420 at 658.531 kb on + strand, within RALBFv3_RS18420 at 658.531 kb on + strand, within RALBFv3_RS18420 at 658.726 kb on + strand, within RALBFv3_RS18420 at 658.727 kb on - strand, within RALBFv3_RS18420 at 658.813 kb on + strand, within RALBFv3_RS18420 at 658.894 kb on - strand, within RALBFv3_RS18420 at 658.895 kb on - strand, within RALBFv3_RS18420 at 659.039 kb on - strand at 659.039 kb on - strand at 659.772 kb on - strand, within RALBFv3_RS18425 at 659.934 kb on - strand at 660.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 657,059 + +0.4 657,059 + +0.7 657,060 - +0.8 657,562 - RALBFv3_RS18415 0.77 +0.3 657,562 - RALBFv3_RS18415 0.77 +0.7 657,562 - RALBFv3_RS18415 0.77 +1.2 657,562 - RALBFv3_RS18415 0.77 +0.9 657,653 + +2.2 657,654 - -0.7 657,654 - -0.2 657,988 + RALBFv3_RS18420 0.19 -0.1 657,989 - RALBFv3_RS18420 0.19 +0.5 657,989 - RALBFv3_RS18420 0.19 -0.3 657,989 - RALBFv3_RS18420 0.19 -0.5 657,989 - RALBFv3_RS18420 0.19 +0.3 657,989 - RALBFv3_RS18420 0.19 +0.2 658,033 + RALBFv3_RS18420 0.22 +0.7 658,081 + RALBFv3_RS18420 0.25 +1.1 658,081 + RALBFv3_RS18420 0.25 +1.9 658,082 - RALBFv3_RS18420 0.25 -0.5 658,181 - RALBFv3_RS18420 0.33 +0.0 658,304 - RALBFv3_RS18420 0.41 +0.1 658,531 + RALBFv3_RS18420 0.58 +0.1 658,531 + RALBFv3_RS18420 0.58 +0.1 658,531 + RALBFv3_RS18420 0.58 -0.1 658,531 + RALBFv3_RS18420 0.58 -2.4 658,726 + RALBFv3_RS18420 0.72 +0.2 658,727 - RALBFv3_RS18420 0.72 +0.5 658,813 + RALBFv3_RS18420 0.78 -0.4 658,894 - RALBFv3_RS18420 0.84 -0.5 658,895 - RALBFv3_RS18420 0.84 +1.1 659,039 - +0.4 659,039 - -0.6 659,772 - RALBFv3_RS18425 0.83 -0.7 659,934 - -1.1 660,020 - +0.3
Or see this region's nucleotide sequence