Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS18415

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS18405 and RALBFv3_RS18410 are separated by 43 nucleotidesRALBFv3_RS18410 and RALBFv3_RS18415 are separated by 153 nucleotidesRALBFv3_RS18415 and RALBFv3_RS18420 are separated by 57 nucleotides RALBFv3_RS18405: RALBFv3_RS18405 - alpha/beta hydrolase, at 655,556 to 656,575 _RS18405 RALBFv3_RS18410: RALBFv3_RS18410 - organic hydroperoxide resistance protein, at 656,619 to 657,044 _RS18410 RALBFv3_RS18415: RALBFv3_RS18415 - MarR family transcriptional regulator, at 657,198 to 657,668 _RS18415 RALBFv3_RS18420: RALBFv3_RS18420 - alpha,alpha-trehalose-phosphate synthase (UDP-forming), at 657,726 to 659,123 _RS18420 Position (kb) 657 658Strain fitness (log2 ratio) -2 -1 0 1 2at 656.352 kb on - strand, within RALBFv3_RS18405at 656.372 kb on + strand, within RALBFv3_RS18405at 657.059 kb on + strandat 657.059 kb on + strandat 657.060 kb on - strandat 657.562 kb on - strand, within RALBFv3_RS18415at 657.562 kb on - strand, within RALBFv3_RS18415at 657.562 kb on - strand, within RALBFv3_RS18415at 657.562 kb on - strand, within RALBFv3_RS18415at 657.653 kb on + strandat 657.654 kb on - strandat 657.654 kb on - strandat 657.988 kb on + strand, within RALBFv3_RS18420at 657.989 kb on - strand, within RALBFv3_RS18420at 657.989 kb on - strand, within RALBFv3_RS18420at 657.989 kb on - strand, within RALBFv3_RS18420at 657.989 kb on - strand, within RALBFv3_RS18420at 657.989 kb on - strand, within RALBFv3_RS18420at 658.033 kb on + strand, within RALBFv3_RS18420at 658.081 kb on + strand, within RALBFv3_RS18420at 658.081 kb on + strand, within RALBFv3_RS18420at 658.082 kb on - strand, within RALBFv3_RS18420at 658.181 kb on - strand, within RALBFv3_RS18420at 658.304 kb on - strand, within RALBFv3_RS18420at 658.531 kb on + strand, within RALBFv3_RS18420at 658.531 kb on + strand, within RALBFv3_RS18420at 658.531 kb on + strand, within RALBFv3_RS18420at 658.531 kb on + strand, within RALBFv3_RS18420

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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656,352 - RALBFv3_RS18405 0.78 -0.1
656,372 + RALBFv3_RS18405 0.80 -0.7
657,059 + +0.4
657,059 + +0.7
657,060 - +0.8
657,562 - RALBFv3_RS18415 0.77 +0.3
657,562 - RALBFv3_RS18415 0.77 +0.7
657,562 - RALBFv3_RS18415 0.77 +1.2
657,562 - RALBFv3_RS18415 0.77 +0.9
657,653 + +2.2
657,654 - -0.7
657,654 - -0.2
657,988 + RALBFv3_RS18420 0.19 -0.1
657,989 - RALBFv3_RS18420 0.19 +0.5
657,989 - RALBFv3_RS18420 0.19 -0.3
657,989 - RALBFv3_RS18420 0.19 -0.5
657,989 - RALBFv3_RS18420 0.19 +0.3
657,989 - RALBFv3_RS18420 0.19 +0.2
658,033 + RALBFv3_RS18420 0.22 +0.7
658,081 + RALBFv3_RS18420 0.25 +1.1
658,081 + RALBFv3_RS18420 0.25 +1.9
658,082 - RALBFv3_RS18420 0.25 -0.5
658,181 - RALBFv3_RS18420 0.33 +0.0
658,304 - RALBFv3_RS18420 0.41 +0.1
658,531 + RALBFv3_RS18420 0.58 +0.1
658,531 + RALBFv3_RS18420 0.58 +0.1
658,531 + RALBFv3_RS18420 0.58 -0.1
658,531 + RALBFv3_RS18420 0.58 -2.4

Or see this region's nucleotide sequence