Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS18095 and RALBFv3_RS24340 are separated by 413 nucleotides RALBFv3_RS24340 and RALBFv3_RS18100 overlap by 42 nucleotides RALBFv3_RS18100 and RALBFv3_RS18105 are separated by 78 nucleotides RALBFv3_RS18105 and RALBFv3_RS18110 are separated by 315 nucleotides
RALBFv3_RS18095: RALBFv3_RS18095 - hypothetical protein, at 582,004 to 582,471
_RS18095
RALBFv3_RS24340: RALBFv3_RS24340 - hypothetical protein, at 582,885 to 583,136
_RS24340
RALBFv3_RS18100: RALBFv3_RS18100 - GGDEF domain-containing protein, at 583,095 to 584,438
_RS18100
RALBFv3_RS18105: RALBFv3_RS18105 - acyloxyacyl hydrolase, at 584,517 to 585,080
_RS18105
RALBFv3_RS18110: RALBFv3_RS18110 - RND transporter, at 585,396 to 586,922
_RS18110
Position (kb) 583
584
585 Strain fitness (log2 ratio) -2
-1
0
1 at 582.297 kb on - strand, within RALBFv3_RS18095 at 582.323 kb on - strand at 582.428 kb on + strand at 582.580 kb on + strand at 582.581 kb on - strand at 582.581 kb on - strand at 582.629 kb on + strand at 582.629 kb on + strand at 582.629 kb on + strand at 582.629 kb on + strand at 582.699 kb on - strand at 582.737 kb on - strand at 582.737 kb on - strand at 582.737 kb on - strand at 582.737 kb on - strand at 582.900 kb on + strand at 582.900 kb on + strand at 582.900 kb on + strand at 582.900 kb on + strand at 582.901 kb on - strand at 582.901 kb on - strand at 582.901 kb on - strand at 582.901 kb on - strand at 582.901 kb on - strand at 582.902 kb on + strand at 582.982 kb on - strand, within RALBFv3_RS24340 at 582.982 kb on - strand, within RALBFv3_RS24340 at 583.116 kb on + strand at 583.117 kb on - strand at 583.117 kb on - strand at 583.575 kb on - strand, within RALBFv3_RS18100 at 583.594 kb on - strand, within RALBFv3_RS18100 at 583.680 kb on + strand, within RALBFv3_RS18100 at 583.680 kb on + strand, within RALBFv3_RS18100 at 584.319 kb on + strand at 584.373 kb on + strand at 584.374 kb on - strand at 584.527 kb on + strand at 584.528 kb on - strand at 584.528 kb on - strand at 584.536 kb on + strand at 584.935 kb on + strand, within RALBFv3_RS18105 at 584.936 kb on - strand, within RALBFv3_RS18105 at 584.936 kb on - strand, within RALBFv3_RS18105 at 584.936 kb on - strand, within RALBFv3_RS18105 at 585.128 kb on + strand at 585.128 kb on + strand at 585.129 kb on - strand at 585.129 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 582,297 - RALBFv3_RS18095 0.63 -0.7 582,323 - +0.9 582,428 + +0.1 582,580 + +0.4 582,581 - -1.6 582,581 - -0.4 582,629 + +0.3 582,629 + -0.9 582,629 + -0.1 582,629 + -0.5 582,699 - -0.3 582,737 - +0.1 582,737 - -2.6 582,737 - +0.9 582,737 - +0.9 582,900 + -0.6 582,900 + -0.3 582,900 + +0.3 582,900 + -0.3 582,901 - -0.0 582,901 - -1.6 582,901 - -0.1 582,901 - +0.4 582,901 - +0.5 582,902 + +0.7 582,982 - RALBFv3_RS24340 0.38 +0.2 582,982 - RALBFv3_RS24340 0.38 +0.4 583,116 + -0.4 583,117 - +1.1 583,117 - +0.0 583,575 - RALBFv3_RS18100 0.36 +0.7 583,594 - RALBFv3_RS18100 0.37 +0.1 583,680 + RALBFv3_RS18100 0.44 +1.7 583,680 + RALBFv3_RS18100 0.44 +0.5 584,319 + +0.2 584,373 + +1.5 584,374 - -0.1 584,527 + -0.4 584,528 - +0.2 584,528 - -0.5 584,536 + +0.4 584,935 + RALBFv3_RS18105 0.74 +0.8 584,936 - RALBFv3_RS18105 0.74 -0.6 584,936 - RALBFv3_RS18105 0.74 +0.5 584,936 - RALBFv3_RS18105 0.74 -0.3 585,128 + +0.1 585,128 + -0.1 585,129 - +0.0 585,129 - -0.2
Or see this region's nucleotide sequence