Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17795 and RALBFv3_RS17800 are separated by 15 nucleotides RALBFv3_RS17800 and RALBFv3_RS17805 are separated by 256 nucleotides RALBFv3_RS17805 and RALBFv3_RS17810 are separated by 38 nucleotides
RALBFv3_RS17795: RALBFv3_RS17795 - hypothetical protein, at 496,353 to 497,258
_RS17795
RALBFv3_RS17800: RALBFv3_RS17800 - hypothetical protein, at 497,274 to 497,708
_RS17800
RALBFv3_RS17805: RALBFv3_RS17805 - VOC family protein, at 497,965 to 498,348
_RS17805
RALBFv3_RS17810: RALBFv3_RS17810 - dienelactone hydrolase, at 498,387 to 499,505
_RS17810
Position (kb) 497
498
499 Strain fitness (log2 ratio) -2
-1
0
1
2 at 496.992 kb on - strand, within RALBFv3_RS17795 at 497.028 kb on + strand, within RALBFv3_RS17795 at 497.074 kb on - strand, within RALBFv3_RS17795 at 497.074 kb on - strand, within RALBFv3_RS17795 at 497.074 kb on - strand, within RALBFv3_RS17795 at 497.076 kb on + strand, within RALBFv3_RS17795 at 497.077 kb on - strand, within RALBFv3_RS17795 at 497.077 kb on - strand, within RALBFv3_RS17795 at 497.095 kb on - strand, within RALBFv3_RS17795 at 497.095 kb on - strand, within RALBFv3_RS17795 at 497.173 kb on - strand at 497.173 kb on - strand at 497.173 kb on - strand at 497.208 kb on + strand at 497.232 kb on + strand at 497.233 kb on - strand at 497.233 kb on - strand at 497.233 kb on - strand at 497.341 kb on + strand, within RALBFv3_RS17800 at 497.342 kb on - strand, within RALBFv3_RS17800 at 497.342 kb on - strand, within RALBFv3_RS17800 at 497.500 kb on + strand, within RALBFv3_RS17800 at 497.500 kb on + strand, within RALBFv3_RS17800 at 497.501 kb on - strand, within RALBFv3_RS17800 at 497.578 kb on + strand, within RALBFv3_RS17800 at 497.909 kb on + strand at 498.148 kb on + strand, within RALBFv3_RS17805 at 498.148 kb on + strand, within RALBFv3_RS17805 at 498.149 kb on - strand, within RALBFv3_RS17805 at 498.149 kb on - strand, within RALBFv3_RS17805 at 498.257 kb on - strand, within RALBFv3_RS17805 at 498.283 kb on + strand, within RALBFv3_RS17805 at 498.283 kb on + strand, within RALBFv3_RS17805 at 498.331 kb on + strand at 498.332 kb on - strand at 498.332 kb on - strand at 498.346 kb on + strand at 498.346 kb on + strand at 498.419 kb on + strand at 498.545 kb on - strand, within RALBFv3_RS17810 at 498.932 kb on + strand, within RALBFv3_RS17810 at 498.932 kb on + strand, within RALBFv3_RS17810 at 498.932 kb on + strand, within RALBFv3_RS17810 at 498.932 kb on + strand, within RALBFv3_RS17810 at 498.933 kb on - strand, within RALBFv3_RS17810 at 499.124 kb on - strand, within RALBFv3_RS17810 at 499.207 kb on + strand, within RALBFv3_RS17810 at 499.207 kb on + strand, within RALBFv3_RS17810 at 499.207 kb on + strand, within RALBFv3_RS17810
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 496,992 - RALBFv3_RS17795 0.71 -0.2 497,028 + RALBFv3_RS17795 0.75 -0.1 497,074 - RALBFv3_RS17795 0.80 +0.1 497,074 - RALBFv3_RS17795 0.80 +1.5 497,074 - RALBFv3_RS17795 0.80 -2.4 497,076 + RALBFv3_RS17795 0.80 +0.0 497,077 - RALBFv3_RS17795 0.80 -0.0 497,077 - RALBFv3_RS17795 0.80 +1.8 497,095 - RALBFv3_RS17795 0.82 -0.3 497,095 - RALBFv3_RS17795 0.82 -2.1 497,173 - -0.7 497,173 - +0.8 497,173 - -0.9 497,208 + -0.3 497,232 + -0.0 497,233 - -0.1 497,233 - -0.1 497,233 - -0.1 497,341 + RALBFv3_RS17800 0.15 +0.2 497,342 - RALBFv3_RS17800 0.16 -0.5 497,342 - RALBFv3_RS17800 0.16 +1.9 497,500 + RALBFv3_RS17800 0.52 +0.1 497,500 + RALBFv3_RS17800 0.52 -0.6 497,501 - RALBFv3_RS17800 0.52 -1.1 497,578 + RALBFv3_RS17800 0.70 +0.3 497,909 + +0.5 498,148 + RALBFv3_RS17805 0.48 +0.4 498,148 + RALBFv3_RS17805 0.48 +0.5 498,149 - RALBFv3_RS17805 0.48 +0.5 498,149 - RALBFv3_RS17805 0.48 -0.4 498,257 - RALBFv3_RS17805 0.76 +0.4 498,283 + RALBFv3_RS17805 0.83 +0.3 498,283 + RALBFv3_RS17805 0.83 +0.4 498,331 + -0.5 498,332 - -0.1 498,332 - +0.1 498,346 + +0.3 498,346 + +0.3 498,419 + -0.1 498,545 - RALBFv3_RS17810 0.14 +0.2 498,932 + RALBFv3_RS17810 0.49 -0.3 498,932 + RALBFv3_RS17810 0.49 +0.7 498,932 + RALBFv3_RS17810 0.49 +0.5 498,932 + RALBFv3_RS17810 0.49 -0.1 498,933 - RALBFv3_RS17810 0.49 +0.3 499,124 - RALBFv3_RS17810 0.66 -0.6 499,207 + RALBFv3_RS17810 0.73 -0.3 499,207 + RALBFv3_RS17810 0.73 +0.3 499,207 + RALBFv3_RS17810 0.73 +0.5
Or see this region's nucleotide sequence