Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17765 and RALBFv3_RS17770 are separated by 138 nucleotides RALBFv3_RS17770 and RALBFv3_RS17775 are separated by 92 nucleotides
RALBFv3_RS17765: RALBFv3_RS17765 - azoreductase, at 490,157 to 490,783
_RS17765
RALBFv3_RS17770: RALBFv3_RS17770 - LysR family transcriptional regulator, at 490,922 to 491,872
_RS17770
RALBFv3_RS17775: RALBFv3_RS17775 - MFS transporter, at 491,965 to 493,536
_RS17775
Position (kb) 490
491
492 Strain fitness (log2 ratio) -1
0
1 at 489.936 kb on + strand at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.350 kb on + strand, within RALBFv3_RS17765 at 490.351 kb on - strand, within RALBFv3_RS17765 at 490.351 kb on - strand, within RALBFv3_RS17765 at 490.422 kb on + strand, within RALBFv3_RS17765 at 490.422 kb on + strand, within RALBFv3_RS17765 at 490.494 kb on + strand, within RALBFv3_RS17765 at 490.494 kb on + strand, within RALBFv3_RS17765 at 490.494 kb on + strand, within RALBFv3_RS17765 at 490.494 kb on + strand, within RALBFv3_RS17765 at 490.495 kb on - strand, within RALBFv3_RS17765 at 490.820 kb on + strand at 490.821 kb on - strand at 490.821 kb on - strand at 490.821 kb on - strand at 490.821 kb on - strand at 490.895 kb on + strand at 491.118 kb on - strand, within RALBFv3_RS17770 at 491.118 kb on - strand, within RALBFv3_RS17770 at 491.338 kb on - strand, within RALBFv3_RS17770 at 491.570 kb on + strand, within RALBFv3_RS17770 at 491.570 kb on + strand, within RALBFv3_RS17770 at 491.837 kb on + strand at 491.898 kb on + strand at 492.194 kb on - strand, within RALBFv3_RS17775 at 492.227 kb on - strand, within RALBFv3_RS17775 at 492.247 kb on + strand, within RALBFv3_RS17775 at 492.500 kb on - strand, within RALBFv3_RS17775 at 492.511 kb on + strand, within RALBFv3_RS17775 at 492.511 kb on + strand, within RALBFv3_RS17775 at 492.607 kb on + strand, within RALBFv3_RS17775 at 492.607 kb on + strand, within RALBFv3_RS17775 at 492.608 kb on - strand, within RALBFv3_RS17775 at 492.608 kb on - strand, within RALBFv3_RS17775 at 492.608 kb on - strand, within RALBFv3_RS17775
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 489,936 + -0.2 490,350 + RALBFv3_RS17765 0.31 +0.4 490,350 + RALBFv3_RS17765 0.31 +0.3 490,350 + RALBFv3_RS17765 0.31 -0.5 490,350 + RALBFv3_RS17765 0.31 -0.1 490,350 + RALBFv3_RS17765 0.31 +0.9 490,350 + RALBFv3_RS17765 0.31 -0.3 490,350 + RALBFv3_RS17765 0.31 +0.6 490,351 - RALBFv3_RS17765 0.31 +1.4 490,351 - RALBFv3_RS17765 0.31 -0.5 490,422 + RALBFv3_RS17765 0.42 -0.9 490,422 + RALBFv3_RS17765 0.42 -0.1 490,494 + RALBFv3_RS17765 0.54 +0.2 490,494 + RALBFv3_RS17765 0.54 -0.1 490,494 + RALBFv3_RS17765 0.54 -1.3 490,494 + RALBFv3_RS17765 0.54 -0.1 490,495 - RALBFv3_RS17765 0.54 -0.2 490,820 + +0.6 490,821 - +0.7 490,821 - +0.1 490,821 - -0.1 490,821 - +0.7 490,895 + +0.2 491,118 - RALBFv3_RS17770 0.21 +1.1 491,118 - RALBFv3_RS17770 0.21 +0.4 491,338 - RALBFv3_RS17770 0.44 +1.2 491,570 + RALBFv3_RS17770 0.68 +0.9 491,570 + RALBFv3_RS17770 0.68 -1.1 491,837 + +0.1 491,898 + +0.1 492,194 - RALBFv3_RS17775 0.15 +0.5 492,227 - RALBFv3_RS17775 0.17 -0.2 492,247 + RALBFv3_RS17775 0.18 +0.3 492,500 - RALBFv3_RS17775 0.34 +0.1 492,511 + RALBFv3_RS17775 0.35 +0.3 492,511 + RALBFv3_RS17775 0.35 +0.9 492,607 + RALBFv3_RS17775 0.41 +0.5 492,607 + RALBFv3_RS17775 0.41 -0.0 492,608 - RALBFv3_RS17775 0.41 -1.2 492,608 - RALBFv3_RS17775 0.41 -0.3 492,608 - RALBFv3_RS17775 0.41 +0.4
Or see this region's nucleotide sequence