Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17310 and RALBFv3_RS17315 are separated by 296 nucleotides RALBFv3_RS17315 and RALBFv3_RS17320 are separated by 61 nucleotides
RALBFv3_RS17310: RALBFv3_RS17310 - arginase, at 374,085 to 374,981
_RS17310
RALBFv3_RS17315: RALBFv3_RS17315 - sugar ABC transporter permease, at 375,278 to 376,294
_RS17315
RALBFv3_RS17320: RALBFv3_RS17320 - quinone oxidoreductase, at 376,356 to 377,354
_RS17320
Position (kb) 375
376
377 Strain fitness (log2 ratio) -1
0
1
2 at 374.494 kb on + strand, within RALBFv3_RS17310 at 374.494 kb on + strand, within RALBFv3_RS17310 at 374.495 kb on - strand, within RALBFv3_RS17310 at 374.637 kb on + strand, within RALBFv3_RS17310 at 374.637 kb on + strand, within RALBFv3_RS17310 at 374.638 kb on - strand, within RALBFv3_RS17310 at 374.660 kb on - strand, within RALBFv3_RS17310 at 374.674 kb on + strand, within RALBFv3_RS17310 at 374.674 kb on + strand, within RALBFv3_RS17310 at 375.080 kb on + strand at 375.081 kb on - strand at 375.081 kb on - strand at 375.081 kb on - strand at 375.081 kb on - strand at 375.081 kb on - strand at 375.467 kb on + strand, within RALBFv3_RS17315 at 375.604 kb on + strand, within RALBFv3_RS17315 at 375.624 kb on - strand, within RALBFv3_RS17315 at 375.715 kb on + strand, within RALBFv3_RS17315 at 375.929 kb on - strand, within RALBFv3_RS17315 at 376.100 kb on + strand, within RALBFv3_RS17315 at 376.299 kb on - strand at 376.630 kb on - strand, within RALBFv3_RS17320 at 376.758 kb on + strand, within RALBFv3_RS17320 at 376.758 kb on + strand, within RALBFv3_RS17320 at 376.758 kb on + strand, within RALBFv3_RS17320 at 376.758 kb on + strand, within RALBFv3_RS17320 at 376.758 kb on + strand, within RALBFv3_RS17320 at 376.758 kb on + strand, within RALBFv3_RS17320 at 376.759 kb on - strand, within RALBFv3_RS17320 at 376.759 kb on - strand, within RALBFv3_RS17320 at 376.759 kb on - strand, within RALBFv3_RS17320 at 376.759 kb on - strand, within RALBFv3_RS17320
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 374,494 + RALBFv3_RS17310 0.46 +1.5 374,494 + RALBFv3_RS17310 0.46 -0.7 374,495 - RALBFv3_RS17310 0.46 -0.2 374,637 + RALBFv3_RS17310 0.62 +0.1 374,637 + RALBFv3_RS17310 0.62 -0.3 374,638 - RALBFv3_RS17310 0.62 +0.5 374,660 - RALBFv3_RS17310 0.64 -0.6 374,674 + RALBFv3_RS17310 0.66 +1.0 374,674 + RALBFv3_RS17310 0.66 -0.1 375,080 + +0.5 375,081 - -0.8 375,081 - +0.2 375,081 - -0.5 375,081 - +0.7 375,081 - -0.4 375,467 + RALBFv3_RS17315 0.19 +0.0 375,604 + RALBFv3_RS17315 0.32 +0.1 375,624 - RALBFv3_RS17315 0.34 -0.5 375,715 + RALBFv3_RS17315 0.43 +0.3 375,929 - RALBFv3_RS17315 0.64 +0.7 376,100 + RALBFv3_RS17315 0.81 +1.3 376,299 - +2.2 376,630 - RALBFv3_RS17320 0.27 -0.2 376,758 + RALBFv3_RS17320 0.40 -0.6 376,758 + RALBFv3_RS17320 0.40 -0.3 376,758 + RALBFv3_RS17320 0.40 +0.1 376,758 + RALBFv3_RS17320 0.40 -0.1 376,758 + RALBFv3_RS17320 0.40 +0.4 376,758 + RALBFv3_RS17320 0.40 +0.6 376,759 - RALBFv3_RS17320 0.40 -1.7 376,759 - RALBFv3_RS17320 0.40 -0.9 376,759 - RALBFv3_RS17320 0.40 -0.5 376,759 - RALBFv3_RS17320 0.40 -0.4
Or see this region's nucleotide sequence