Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS16800 and RALBFv3_RS16805 are separated by 215 nucleotides RALBFv3_RS16805 and RALBFv3_RS16810 are separated by 65 nucleotides
RALBFv3_RS16800: RALBFv3_RS16800 - hypothetical protein, at 247,185 to 247,793
_RS16800
RALBFv3_RS16805: RALBFv3_RS16805 - potassium transporter Kef, at 248,009 to 249,226
_RS16805
RALBFv3_RS16810: RALBFv3_RS16810 - NAD(P)H-dependent oxidoreductase, at 249,292 to 249,846
_RS16810
Position (kb) 248
249
250 Strain fitness (log2 ratio) -1
0
1 at 247.171 kb on + strand at 247.172 kb on - strand at 247.291 kb on + strand, within RALBFv3_RS16800 at 247.292 kb on - strand, within RALBFv3_RS16800 at 247.594 kb on + strand, within RALBFv3_RS16800 at 247.594 kb on + strand, within RALBFv3_RS16800 at 247.595 kb on - strand, within RALBFv3_RS16800 at 247.595 kb on - strand, within RALBFv3_RS16800 at 247.666 kb on + strand, within RALBFv3_RS16800 at 247.667 kb on - strand, within RALBFv3_RS16800 at 247.825 kb on + strand at 247.826 kb on - strand at 247.826 kb on - strand at 247.898 kb on + strand at 247.898 kb on + strand at 247.898 kb on + strand at 247.899 kb on - strand at 247.899 kb on - strand at 247.900 kb on + strand at 247.901 kb on - strand at 247.901 kb on - strand at 247.906 kb on + strand at 247.906 kb on + strand at 247.906 kb on + strand at 248.335 kb on - strand, within RALBFv3_RS16805 at 248.434 kb on - strand, within RALBFv3_RS16805 at 248.736 kb on - strand, within RALBFv3_RS16805 at 249.431 kb on - strand, within RALBFv3_RS16810 at 249.526 kb on + strand, within RALBFv3_RS16810 at 249.526 kb on + strand, within RALBFv3_RS16810 at 249.527 kb on - strand, within RALBFv3_RS16810 at 249.527 kb on - strand, within RALBFv3_RS16810 at 249.734 kb on - strand, within RALBFv3_RS16810 at 249.904 kb on + strand at 249.905 kb on - strand at 250.033 kb on + strand at 250.034 kb on - strand at 250.034 kb on - strand at 250.047 kb on + strand at 250.047 kb on + strand at 250.047 kb on + strand at 250.047 kb on + strand at 250.048 kb on - strand at 250.048 kb on - strand at 250.115 kb on + strand at 250.147 kb on + strand at 250.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 247,171 + +0.2 247,172 - -0.0 247,291 + RALBFv3_RS16800 0.17 +0.2 247,292 - RALBFv3_RS16800 0.18 +0.2 247,594 + RALBFv3_RS16800 0.67 -0.1 247,594 + RALBFv3_RS16800 0.67 -0.8 247,595 - RALBFv3_RS16800 0.67 -0.5 247,595 - RALBFv3_RS16800 0.67 +1.1 247,666 + RALBFv3_RS16800 0.79 -1.1 247,667 - RALBFv3_RS16800 0.79 -0.3 247,825 + -0.8 247,826 - +1.5 247,826 - -0.5 247,898 + -0.6 247,898 + +0.1 247,898 + -0.8 247,899 - +0.2 247,899 - +0.5 247,900 + +0.2 247,901 - -0.6 247,901 - +0.1 247,906 + -1.1 247,906 + -0.6 247,906 + +0.2 248,335 - RALBFv3_RS16805 0.27 +0.3 248,434 - RALBFv3_RS16805 0.35 -0.1 248,736 - RALBFv3_RS16805 0.60 +0.7 249,431 - RALBFv3_RS16810 0.25 -1.6 249,526 + RALBFv3_RS16810 0.42 +0.1 249,526 + RALBFv3_RS16810 0.42 -0.3 249,527 - RALBFv3_RS16810 0.42 +0.1 249,527 - RALBFv3_RS16810 0.42 +0.1 249,734 - RALBFv3_RS16810 0.80 -0.2 249,904 + +0.7 249,905 - +0.5 250,033 + -0.5 250,034 - +0.5 250,034 - +0.1 250,047 + -0.3 250,047 + +0.2 250,047 + +0.4 250,047 + -1.2 250,048 - -0.1 250,048 - +0.6 250,115 + +0.7 250,147 + -0.7 250,148 - +0.2
Or see this region's nucleotide sequence