Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS16775 and RALBFv3_RS24205 are separated by 109 nucleotides RALBFv3_RS24205 and RALBFv3_RS16780 are separated by 191 nucleotides RALBFv3_RS16780 and RALBFv3_RS16785 are separated by 13 nucleotides
RALBFv3_RS16775: RALBFv3_RS16775 - acyltransferase, at 241,097 to 241,996
_RS16775
RALBFv3_RS24205: RALBFv3_RS24205 - hypothetical protein, at 242,106 to 242,324
_RS24205
RALBFv3_RS16780: RALBFv3_RS16780 - flavoprotein, at 242,516 to 242,821
_RS16780
RALBFv3_RS16785: RALBFv3_RS16785 - short-chain dehydrogenase, at 242,835 to 244,046
_RS16785
Position (kb) 242
243 Strain fitness (log2 ratio) -1
0
1 at 241.626 kb on + strand, within RALBFv3_RS16775 at 241.626 kb on + strand, within RALBFv3_RS16775 at 241.626 kb on + strand, within RALBFv3_RS16775 at 241.626 kb on + strand, within RALBFv3_RS16775 at 241.627 kb on - strand, within RALBFv3_RS16775 at 241.627 kb on - strand, within RALBFv3_RS16775 at 241.627 kb on - strand, within RALBFv3_RS16775 at 241.627 kb on - strand, within RALBFv3_RS16775 at 241.627 kb on - strand, within RALBFv3_RS16775 at 241.627 kb on - strand, within RALBFv3_RS16775 at 241.698 kb on - strand, within RALBFv3_RS16775 at 241.735 kb on - strand, within RALBFv3_RS16775 at 241.735 kb on - strand, within RALBFv3_RS16775 at 241.735 kb on - strand, within RALBFv3_RS16775 at 241.907 kb on + strand at 241.971 kb on - strand at 241.971 kb on - strand at 242.012 kb on + strand at 242.069 kb on + strand at 242.087 kb on + strand at 242.088 kb on - strand at 242.210 kb on + strand, within RALBFv3_RS24205 at 242.310 kb on + strand at 242.311 kb on - strand at 242.332 kb on - strand at 242.388 kb on + strand at 242.474 kb on - strand at 242.502 kb on + strand at 242.503 kb on - strand at 242.755 kb on + strand, within RALBFv3_RS16780 at 242.755 kb on + strand, within RALBFv3_RS16780 at 242.756 kb on - strand, within RALBFv3_RS16780 at 242.756 kb on - strand, within RALBFv3_RS16780 at 242.896 kb on - strand at 242.937 kb on + strand at 242.937 kb on + strand at 242.937 kb on + strand at 242.938 kb on - strand at 242.938 kb on - strand at 243.025 kb on + strand, within RALBFv3_RS16785 at 243.301 kb on - strand, within RALBFv3_RS16785 at 243.659 kb on + strand, within RALBFv3_RS16785 at 243.659 kb on + strand, within RALBFv3_RS16785 at 243.659 kb on + strand, within RALBFv3_RS16785 at 243.660 kb on - strand, within RALBFv3_RS16785 at 243.690 kb on + strand, within RALBFv3_RS16785 at 243.690 kb on + strand, within RALBFv3_RS16785 at 243.691 kb on - strand, within RALBFv3_RS16785
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 241,626 + RALBFv3_RS16775 0.59 +0.5 241,626 + RALBFv3_RS16775 0.59 -0.8 241,626 + RALBFv3_RS16775 0.59 -0.5 241,626 + RALBFv3_RS16775 0.59 -1.6 241,627 - RALBFv3_RS16775 0.59 -0.5 241,627 - RALBFv3_RS16775 0.59 -0.3 241,627 - RALBFv3_RS16775 0.59 +0.2 241,627 - RALBFv3_RS16775 0.59 -0.6 241,627 - RALBFv3_RS16775 0.59 +0.1 241,627 - RALBFv3_RS16775 0.59 +0.1 241,698 - RALBFv3_RS16775 0.67 -1.0 241,735 - RALBFv3_RS16775 0.71 -0.1 241,735 - RALBFv3_RS16775 0.71 -0.1 241,735 - RALBFv3_RS16775 0.71 +0.5 241,907 + +0.6 241,971 - +0.7 241,971 - -0.6 242,012 + +0.3 242,069 + -0.1 242,087 + -0.5 242,088 - -0.5 242,210 + RALBFv3_RS24205 0.47 -0.0 242,310 + +0.4 242,311 - -0.7 242,332 - -0.1 242,388 + +1.1 242,474 - +0.2 242,502 + -0.5 242,503 - +0.4 242,755 + RALBFv3_RS16780 0.78 +0.9 242,755 + RALBFv3_RS16780 0.78 +0.9 242,756 - RALBFv3_RS16780 0.78 +1.3 242,756 - RALBFv3_RS16780 0.78 -0.2 242,896 - -0.1 242,937 + -0.8 242,937 + -0.2 242,937 + -0.4 242,938 - -0.1 242,938 - +1.2 243,025 + RALBFv3_RS16785 0.16 -0.4 243,301 - RALBFv3_RS16785 0.38 -0.8 243,659 + RALBFv3_RS16785 0.68 +0.4 243,659 + RALBFv3_RS16785 0.68 +0.2 243,659 + RALBFv3_RS16785 0.68 +0.2 243,660 - RALBFv3_RS16785 0.68 +1.3 243,690 + RALBFv3_RS16785 0.71 +0.0 243,690 + RALBFv3_RS16785 0.71 +0.4 243,691 - RALBFv3_RS16785 0.71 -0.9
Or see this region's nucleotide sequence