Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS16605 and RALBFv3_RS16610 overlap by 4 nucleotides RALBFv3_RS16610 and RALBFv3_RS24195 are separated by 108 nucleotides RALBFv3_RS24195 and RALBFv3_RS16615 are separated by 22 nucleotides
RALBFv3_RS16605: RALBFv3_RS16605 - oxacillin resistance-associated protein FmtC, at 201,775 to 204,441
_RS16605
RALBFv3_RS16610: RALBFv3_RS16610 - virulence factor family protein, at 204,438 to 206,261
_RS16610
RALBFv3_RS24195: RALBFv3_RS24195 - hypothetical protein, at 206,370 to 207,052
_RS24195
RALBFv3_RS16615: RALBFv3_RS16615 - SulP family inorganic anion transporter, at 207,075 to 208,772
_RS16615
Position (kb) 204
205
206
207 Strain fitness (log2 ratio) -1
0
1
2 at 203.572 kb on + strand, within RALBFv3_RS16605 at 203.572 kb on + strand, within RALBFv3_RS16605 at 203.572 kb on + strand, within RALBFv3_RS16605 at 203.572 kb on + strand, within RALBFv3_RS16605 at 203.573 kb on - strand, within RALBFv3_RS16605 at 203.573 kb on - strand, within RALBFv3_RS16605 at 203.573 kb on - strand, within RALBFv3_RS16605 at 203.573 kb on - strand, within RALBFv3_RS16605 at 203.573 kb on - strand, within RALBFv3_RS16605 at 203.573 kb on - strand, within RALBFv3_RS16605 at 203.695 kb on + strand, within RALBFv3_RS16605 at 203.695 kb on + strand, within RALBFv3_RS16605 at 203.696 kb on - strand, within RALBFv3_RS16605 at 203.696 kb on - strand, within RALBFv3_RS16605 at 203.725 kb on + strand, within RALBFv3_RS16605 at 203.726 kb on - strand, within RALBFv3_RS16605 at 203.749 kb on + strand, within RALBFv3_RS16605 at 203.750 kb on - strand, within RALBFv3_RS16605 at 203.750 kb on - strand, within RALBFv3_RS16605 at 203.770 kb on + strand, within RALBFv3_RS16605 at 203.770 kb on + strand, within RALBFv3_RS16605 at 203.770 kb on + strand, within RALBFv3_RS16605 at 203.770 kb on + strand, within RALBFv3_RS16605 at 203.770 kb on + strand, within RALBFv3_RS16605 at 203.770 kb on + strand, within RALBFv3_RS16605 at 203.771 kb on - strand, within RALBFv3_RS16605 at 203.771 kb on - strand, within RALBFv3_RS16605 at 203.986 kb on + strand, within RALBFv3_RS16605 at 204.382 kb on - strand at 204.382 kb on - strand at 204.450 kb on - strand at 205.099 kb on - strand, within RALBFv3_RS16610 at 205.116 kb on + strand, within RALBFv3_RS16610 at 205.119 kb on + strand, within RALBFv3_RS16610 at 205.193 kb on + strand, within RALBFv3_RS16610 at 205.790 kb on + strand, within RALBFv3_RS16610 at 205.791 kb on + strand, within RALBFv3_RS16610 at 205.809 kb on - strand, within RALBFv3_RS16610 at 205.854 kb on + strand, within RALBFv3_RS16610 at 205.854 kb on + strand, within RALBFv3_RS16610 at 205.855 kb on - strand, within RALBFv3_RS16610 at 205.855 kb on - strand, within RALBFv3_RS16610 at 206.104 kb on - strand at 206.260 kb on - strand at 206.260 kb on - strand at 206.298 kb on - strand at 206.335 kb on - strand at 206.335 kb on - strand at 206.335 kb on - strand at 206.335 kb on - strand at 206.335 kb on - strand at 206.335 kb on - strand at 206.494 kb on + strand, within RALBFv3_RS24195 at 206.494 kb on + strand, within RALBFv3_RS24195 at 206.494 kb on + strand, within RALBFv3_RS24195 at 206.495 kb on - strand, within RALBFv3_RS24195 at 206.495 kb on - strand, within RALBFv3_RS24195 at 206.495 kb on - strand, within RALBFv3_RS24195 at 206.495 kb on - strand, within RALBFv3_RS24195 at 206.497 kb on - strand, within RALBFv3_RS24195 at 206.623 kb on + strand, within RALBFv3_RS24195 at 206.623 kb on + strand, within RALBFv3_RS24195 at 206.624 kb on - strand, within RALBFv3_RS24195 at 206.679 kb on + strand, within RALBFv3_RS24195 at 206.680 kb on - strand, within RALBFv3_RS24195 at 207.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 203,572 + RALBFv3_RS16605 0.67 -0.2 203,572 + RALBFv3_RS16605 0.67 -0.1 203,572 + RALBFv3_RS16605 0.67 -0.4 203,572 + RALBFv3_RS16605 0.67 +0.9 203,573 - RALBFv3_RS16605 0.67 +0.6 203,573 - RALBFv3_RS16605 0.67 +0.5 203,573 - RALBFv3_RS16605 0.67 +0.7 203,573 - RALBFv3_RS16605 0.67 +1.4 203,573 - RALBFv3_RS16605 0.67 +0.4 203,573 - RALBFv3_RS16605 0.67 +1.8 203,695 + RALBFv3_RS16605 0.72 -1.5 203,695 + RALBFv3_RS16605 0.72 -0.6 203,696 - RALBFv3_RS16605 0.72 +0.5 203,696 - RALBFv3_RS16605 0.72 +1.0 203,725 + RALBFv3_RS16605 0.73 -0.1 203,726 - RALBFv3_RS16605 0.73 +0.3 203,749 + RALBFv3_RS16605 0.74 -0.0 203,750 - RALBFv3_RS16605 0.74 -0.3 203,750 - RALBFv3_RS16605 0.74 +0.3 203,770 + RALBFv3_RS16605 0.75 -0.0 203,770 + RALBFv3_RS16605 0.75 -0.6 203,770 + RALBFv3_RS16605 0.75 -0.1 203,770 + RALBFv3_RS16605 0.75 -1.4 203,770 + RALBFv3_RS16605 0.75 -0.1 203,770 + RALBFv3_RS16605 0.75 -0.6 203,771 - RALBFv3_RS16605 0.75 +0.1 203,771 - RALBFv3_RS16605 0.75 +0.5 203,986 + RALBFv3_RS16605 0.83 -1.7 204,382 - +0.8 204,382 - +0.5 204,450 - +0.4 205,099 - RALBFv3_RS16610 0.36 +1.1 205,116 + RALBFv3_RS16610 0.37 +0.8 205,119 + RALBFv3_RS16610 0.37 +0.5 205,193 + RALBFv3_RS16610 0.41 +0.2 205,790 + RALBFv3_RS16610 0.74 +0.0 205,791 + RALBFv3_RS16610 0.74 -0.1 205,809 - RALBFv3_RS16610 0.75 +0.6 205,854 + RALBFv3_RS16610 0.78 +0.1 205,854 + RALBFv3_RS16610 0.78 +0.6 205,855 - RALBFv3_RS16610 0.78 +1.6 205,855 - RALBFv3_RS16610 0.78 -0.2 206,104 - -0.4 206,260 - -0.4 206,260 - +0.9 206,298 - +0.0 206,335 - +0.7 206,335 - -0.0 206,335 - -0.7 206,335 - +0.9 206,335 - +0.3 206,335 - -1.6 206,494 + RALBFv3_RS24195 0.18 +0.3 206,494 + RALBFv3_RS24195 0.18 -0.3 206,494 + RALBFv3_RS24195 0.18 +0.8 206,495 - RALBFv3_RS24195 0.18 -0.0 206,495 - RALBFv3_RS24195 0.18 -0.0 206,495 - RALBFv3_RS24195 0.18 -0.6 206,495 - RALBFv3_RS24195 0.18 -0.4 206,497 - RALBFv3_RS24195 0.19 +0.7 206,623 + RALBFv3_RS24195 0.37 -1.1 206,623 + RALBFv3_RS24195 0.37 -0.9 206,624 - RALBFv3_RS24195 0.37 -1.1 206,679 + RALBFv3_RS24195 0.45 +0.0 206,680 - RALBFv3_RS24195 0.45 -0.1 207,193 - +0.4
Or see this region's nucleotide sequence