Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS16610

Experiment: CPG

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS16605 and RALBFv3_RS16610 overlap by 4 nucleotidesRALBFv3_RS16610 and RALBFv3_RS24195 are separated by 108 nucleotidesRALBFv3_RS24195 and RALBFv3_RS16615 are separated by 22 nucleotides RALBFv3_RS16605: RALBFv3_RS16605 - oxacillin resistance-associated protein FmtC, at 201,775 to 204,441 _RS16605 RALBFv3_RS16610: RALBFv3_RS16610 - virulence factor family protein, at 204,438 to 206,261 _RS16610 RALBFv3_RS24195: RALBFv3_RS24195 - hypothetical protein, at 206,370 to 207,052 _RS24195 RALBFv3_RS16615: RALBFv3_RS16615 - SulP family inorganic anion transporter, at 207,075 to 208,772 _RS16615 Position (kb) 204 205 206 207Strain fitness (log2 ratio) -1 0 1 2at 203.572 kb on + strand, within RALBFv3_RS16605at 203.572 kb on + strand, within RALBFv3_RS16605at 203.572 kb on + strand, within RALBFv3_RS16605at 203.572 kb on + strand, within RALBFv3_RS16605at 203.573 kb on - strand, within RALBFv3_RS16605at 203.573 kb on - strand, within RALBFv3_RS16605at 203.573 kb on - strand, within RALBFv3_RS16605at 203.573 kb on - strand, within RALBFv3_RS16605at 203.573 kb on - strand, within RALBFv3_RS16605at 203.573 kb on - strand, within RALBFv3_RS16605at 203.695 kb on + strand, within RALBFv3_RS16605at 203.695 kb on + strand, within RALBFv3_RS16605at 203.696 kb on - strand, within RALBFv3_RS16605at 203.696 kb on - strand, within RALBFv3_RS16605at 203.725 kb on + strand, within RALBFv3_RS16605at 203.726 kb on - strand, within RALBFv3_RS16605at 203.749 kb on + strand, within RALBFv3_RS16605at 203.750 kb on - strand, within RALBFv3_RS16605at 203.750 kb on - strand, within RALBFv3_RS16605at 203.770 kb on + strand, within RALBFv3_RS16605at 203.770 kb on + strand, within RALBFv3_RS16605at 203.770 kb on + strand, within RALBFv3_RS16605at 203.770 kb on + strand, within RALBFv3_RS16605at 203.770 kb on + strand, within RALBFv3_RS16605at 203.770 kb on + strand, within RALBFv3_RS16605at 203.771 kb on - strand, within RALBFv3_RS16605at 203.771 kb on - strand, within RALBFv3_RS16605at 203.986 kb on + strand, within RALBFv3_RS16605at 204.382 kb on - strandat 204.382 kb on - strandat 204.450 kb on - strandat 205.099 kb on - strand, within RALBFv3_RS16610at 205.116 kb on + strand, within RALBFv3_RS16610at 205.119 kb on + strand, within RALBFv3_RS16610at 205.193 kb on + strand, within RALBFv3_RS16610at 205.790 kb on + strand, within RALBFv3_RS16610at 205.791 kb on + strand, within RALBFv3_RS16610at 205.809 kb on - strand, within RALBFv3_RS16610at 205.854 kb on + strand, within RALBFv3_RS16610at 205.854 kb on + strand, within RALBFv3_RS16610at 205.855 kb on - strand, within RALBFv3_RS16610at 205.855 kb on - strand, within RALBFv3_RS16610at 206.104 kb on - strandat 206.260 kb on - strandat 206.260 kb on - strandat 206.298 kb on - strandat 206.335 kb on - strandat 206.335 kb on - strandat 206.335 kb on - strandat 206.335 kb on - strandat 206.335 kb on - strandat 206.335 kb on - strandat 206.494 kb on + strand, within RALBFv3_RS24195at 206.494 kb on + strand, within RALBFv3_RS24195at 206.494 kb on + strand, within RALBFv3_RS24195at 206.495 kb on - strand, within RALBFv3_RS24195at 206.495 kb on - strand, within RALBFv3_RS24195at 206.495 kb on - strand, within RALBFv3_RS24195at 206.495 kb on - strand, within RALBFv3_RS24195at 206.497 kb on - strand, within RALBFv3_RS24195at 206.623 kb on + strand, within RALBFv3_RS24195at 206.623 kb on + strand, within RALBFv3_RS24195at 206.624 kb on - strand, within RALBFv3_RS24195at 206.679 kb on + strand, within RALBFv3_RS24195at 206.680 kb on - strand, within RALBFv3_RS24195at 207.193 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CPG
remove
203,572 + RALBFv3_RS16605 0.67 -0.2
203,572 + RALBFv3_RS16605 0.67 -0.1
203,572 + RALBFv3_RS16605 0.67 -0.4
203,572 + RALBFv3_RS16605 0.67 +0.9
203,573 - RALBFv3_RS16605 0.67 +0.6
203,573 - RALBFv3_RS16605 0.67 +0.5
203,573 - RALBFv3_RS16605 0.67 +0.7
203,573 - RALBFv3_RS16605 0.67 +1.4
203,573 - RALBFv3_RS16605 0.67 +0.4
203,573 - RALBFv3_RS16605 0.67 +1.8
203,695 + RALBFv3_RS16605 0.72 -1.5
203,695 + RALBFv3_RS16605 0.72 -0.6
203,696 - RALBFv3_RS16605 0.72 +0.5
203,696 - RALBFv3_RS16605 0.72 +1.0
203,725 + RALBFv3_RS16605 0.73 -0.1
203,726 - RALBFv3_RS16605 0.73 +0.3
203,749 + RALBFv3_RS16605 0.74 -0.0
203,750 - RALBFv3_RS16605 0.74 -0.3
203,750 - RALBFv3_RS16605 0.74 +0.3
203,770 + RALBFv3_RS16605 0.75 -0.0
203,770 + RALBFv3_RS16605 0.75 -0.6
203,770 + RALBFv3_RS16605 0.75 -0.1
203,770 + RALBFv3_RS16605 0.75 -1.4
203,770 + RALBFv3_RS16605 0.75 -0.1
203,770 + RALBFv3_RS16605 0.75 -0.6
203,771 - RALBFv3_RS16605 0.75 +0.1
203,771 - RALBFv3_RS16605 0.75 +0.5
203,986 + RALBFv3_RS16605 0.83 -1.7
204,382 - +0.8
204,382 - +0.5
204,450 - +0.4
205,099 - RALBFv3_RS16610 0.36 +1.1
205,116 + RALBFv3_RS16610 0.37 +0.8
205,119 + RALBFv3_RS16610 0.37 +0.5
205,193 + RALBFv3_RS16610 0.41 +0.2
205,790 + RALBFv3_RS16610 0.74 +0.0
205,791 + RALBFv3_RS16610 0.74 -0.1
205,809 - RALBFv3_RS16610 0.75 +0.6
205,854 + RALBFv3_RS16610 0.78 +0.1
205,854 + RALBFv3_RS16610 0.78 +0.6
205,855 - RALBFv3_RS16610 0.78 +1.6
205,855 - RALBFv3_RS16610 0.78 -0.2
206,104 - -0.4
206,260 - -0.4
206,260 - +0.9
206,298 - +0.0
206,335 - +0.7
206,335 - -0.0
206,335 - -0.7
206,335 - +0.9
206,335 - +0.3
206,335 - -1.6
206,494 + RALBFv3_RS24195 0.18 +0.3
206,494 + RALBFv3_RS24195 0.18 -0.3
206,494 + RALBFv3_RS24195 0.18 +0.8
206,495 - RALBFv3_RS24195 0.18 -0.0
206,495 - RALBFv3_RS24195 0.18 -0.0
206,495 - RALBFv3_RS24195 0.18 -0.6
206,495 - RALBFv3_RS24195 0.18 -0.4
206,497 - RALBFv3_RS24195 0.19 +0.7
206,623 + RALBFv3_RS24195 0.37 -1.1
206,623 + RALBFv3_RS24195 0.37 -0.9
206,624 - RALBFv3_RS24195 0.37 -1.1
206,679 + RALBFv3_RS24195 0.45 +0.0
206,680 - RALBFv3_RS24195 0.45 -0.1
207,193 - +0.4

Or see this region's nucleotide sequence