Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS16540 and RALBFv3_RS16545 are separated by 541 nucleotides RALBFv3_RS16545 and RALBFv3_RS16550 are separated by 50 nucleotides RALBFv3_RS16550 and RALBFv3_RS16555 overlap by 1 nucleotides
RALBFv3_RS16540: RALBFv3_RS16540 - FAD-dependent oxidoreductase, at 181,828 to 182,913
_RS16540
RALBFv3_RS16545: RALBFv3_RS16545 - spore coat protein U, at 183,455 to 183,973
_RS16545
RALBFv3_RS16550: RALBFv3_RS16550 - molecular chaperone, at 184,024 to 184,749
_RS16550
RALBFv3_RS16555: RALBFv3_RS16555 - fimbrial biogenesis outer membrane usher protein, at 184,749 to 187,136
_RS16555
Position (kb) 183
184 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 182.487 kb on + strand, within RALBFv3_RS16540 at 182.487 kb on + strand, within RALBFv3_RS16540 at 182.488 kb on - strand, within RALBFv3_RS16540 at 182.488 kb on - strand, within RALBFv3_RS16540 at 182.540 kb on + strand, within RALBFv3_RS16540 at 182.541 kb on - strand, within RALBFv3_RS16540 at 182.541 kb on - strand, within RALBFv3_RS16540 at 182.701 kb on + strand, within RALBFv3_RS16540 at 182.702 kb on - strand, within RALBFv3_RS16540 at 182.702 kb on - strand, within RALBFv3_RS16540 at 182.759 kb on + strand, within RALBFv3_RS16540 at 182.759 kb on + strand, within RALBFv3_RS16540 at 182.771 kb on - strand, within RALBFv3_RS16540 at 182.803 kb on + strand, within RALBFv3_RS16540 at 182.817 kb on + strand at 182.817 kb on + strand at 182.818 kb on - strand at 182.818 kb on - strand at 182.818 kb on - strand at 182.824 kb on + strand at 182.824 kb on + strand at 182.824 kb on + strand at 182.824 kb on + strand at 182.825 kb on - strand at 182.828 kb on - strand at 182.956 kb on + strand at 183.003 kb on - strand at 183.060 kb on + strand at 183.084 kb on - strand at 183.089 kb on + strand at 183.113 kb on + strand at 183.115 kb on + strand at 183.163 kb on + strand at 183.355 kb on - strand at 183.486 kb on + strand at 183.486 kb on + strand at 183.487 kb on - strand at 183.487 kb on - strand at 183.704 kb on + strand, within RALBFv3_RS16545 at 183.704 kb on + strand, within RALBFv3_RS16545 at 183.704 kb on + strand, within RALBFv3_RS16545 at 183.705 kb on - strand, within RALBFv3_RS16545 at 183.705 kb on - strand, within RALBFv3_RS16545 at 183.801 kb on - strand, within RALBFv3_RS16545 at 183.939 kb on - strand at 184.039 kb on + strand at 184.040 kb on - strand at 184.202 kb on + strand, within RALBFv3_RS16550 at 184.202 kb on + strand, within RALBFv3_RS16550 at 184.202 kb on + strand, within RALBFv3_RS16550 at 184.202 kb on + strand, within RALBFv3_RS16550 at 184.202 kb on + strand, within RALBFv3_RS16550 at 184.203 kb on - strand, within RALBFv3_RS16550 at 184.203 kb on - strand, within RALBFv3_RS16550 at 184.203 kb on - strand, within RALBFv3_RS16550 at 184.203 kb on - strand, within RALBFv3_RS16550 at 184.203 kb on - strand, within RALBFv3_RS16550 at 184.203 kb on - strand, within RALBFv3_RS16550 at 184.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 182,487 + RALBFv3_RS16540 0.61 -0.6 182,487 + RALBFv3_RS16540 0.61 -0.6 182,488 - RALBFv3_RS16540 0.61 -0.6 182,488 - RALBFv3_RS16540 0.61 -0.2 182,540 + RALBFv3_RS16540 0.66 -0.5 182,541 - RALBFv3_RS16540 0.66 +0.3 182,541 - RALBFv3_RS16540 0.66 -0.8 182,701 + RALBFv3_RS16540 0.80 -1.2 182,702 - RALBFv3_RS16540 0.80 +0.1 182,702 - RALBFv3_RS16540 0.80 -0.3 182,759 + RALBFv3_RS16540 0.86 -3.0 182,759 + RALBFv3_RS16540 0.86 -0.2 182,771 - RALBFv3_RS16540 0.87 -0.0 182,803 + RALBFv3_RS16540 0.90 -0.6 182,817 + -0.0 182,817 + -0.2 182,818 - +0.6 182,818 - +0.3 182,818 - -0.8 182,824 + +0.4 182,824 + -1.0 182,824 + -0.0 182,824 + -0.5 182,825 - +0.0 182,828 - -0.6 182,956 + +0.4 183,003 - +0.3 183,060 + +0.6 183,084 - +0.2 183,089 + -0.8 183,113 + +0.6 183,115 + -2.3 183,163 + -0.1 183,355 - -0.3 183,486 + +0.4 183,486 + +0.7 183,487 - -0.2 183,487 - +1.0 183,704 + RALBFv3_RS16545 0.48 +0.8 183,704 + RALBFv3_RS16545 0.48 +0.4 183,704 + RALBFv3_RS16545 0.48 +0.5 183,705 - RALBFv3_RS16545 0.48 +0.7 183,705 - RALBFv3_RS16545 0.48 -0.0 183,801 - RALBFv3_RS16545 0.67 +0.6 183,939 - +0.4 184,039 + -0.5 184,040 - +0.4 184,202 + RALBFv3_RS16550 0.25 -0.6 184,202 + RALBFv3_RS16550 0.25 -0.6 184,202 + RALBFv3_RS16550 0.25 +0.2 184,202 + RALBFv3_RS16550 0.25 -0.6 184,202 + RALBFv3_RS16550 0.25 -0.7 184,203 - RALBFv3_RS16550 0.25 -0.4 184,203 - RALBFv3_RS16550 0.25 -0.1 184,203 - RALBFv3_RS16550 0.25 -0.3 184,203 - RALBFv3_RS16550 0.25 -0.1 184,203 - RALBFv3_RS16550 0.25 -0.3 184,203 - RALBFv3_RS16550 0.25 +0.0 184,921 - +0.6
Or see this region's nucleotide sequence