Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS16155

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS16150 and RALBFv3_RS16155 are separated by 204 nucleotidesRALBFv3_RS16155 and RALBFv3_RS16160 are separated by 198 nucleotides RALBFv3_RS16150: RALBFv3_RS16150 - NAD-dependent succinate-semialdehyde dehydrogenase, at 64,986 to 66,467 _RS16150 RALBFv3_RS16155: RALBFv3_RS16155 - type III effector, OspD family, at 66,672 to 69,191 _RS16155 RALBFv3_RS16160: RALBFv3_RS16160 - membrane protein, at 69,390 to 70,823 _RS16160 Position (kb) 66 67 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2 3at 65.727 kb on + strand, within RALBFv3_RS16150at 65.727 kb on + strand, within RALBFv3_RS16150at 65.727 kb on + strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.728 kb on - strand, within RALBFv3_RS16150at 65.729 kb on - strand, within RALBFv3_RS16150at 65.734 kb on + strand, within RALBFv3_RS16150at 65.895 kb on + strand, within RALBFv3_RS16150at 65.895 kb on + strand, within RALBFv3_RS16150at 65.896 kb on - strand, within RALBFv3_RS16150at 65.896 kb on - strand, within RALBFv3_RS16150at 65.896 kb on - strand, within RALBFv3_RS16150at 65.913 kb on + strand, within RALBFv3_RS16150at 65.913 kb on + strand, within RALBFv3_RS16150at 66.114 kb on + strand, within RALBFv3_RS16150at 66.114 kb on + strand, within RALBFv3_RS16150at 66.267 kb on + strand, within RALBFv3_RS16150at 66.278 kb on + strand, within RALBFv3_RS16150at 66.278 kb on + strand, within RALBFv3_RS16150at 66.278 kb on + strand, within RALBFv3_RS16150at 66.279 kb on - strand, within RALBFv3_RS16150at 66.279 kb on - strand, within RALBFv3_RS16150at 66.391 kb on - strandat 66.411 kb on + strandat 66.413 kb on - strandat 66.427 kb on - strandat 66.427 kb on - strandat 66.441 kb on + strandat 66.441 kb on + strandat 66.441 kb on + strandat 66.441 kb on + strandat 66.441 kb on + strandat 66.442 kb on - strandat 66.442 kb on - strandat 66.442 kb on - strandat 66.465 kb on + strandat 66.465 kb on + strandat 66.465 kb on + strandat 66.717 kb on + strandat 66.718 kb on - strandat 66.718 kb on - strandat 66.776 kb on - strandat 66.776 kb on - strandat 66.776 kb on - strandat 66.933 kb on + strand, within RALBFv3_RS16155at 67.122 kb on + strand, within RALBFv3_RS16155at 67.123 kb on - strand, within RALBFv3_RS16155at 67.166 kb on + strand, within RALBFv3_RS16155at 67.167 kb on - strand, within RALBFv3_RS16155at 67.234 kb on - strand, within RALBFv3_RS16155at 67.234 kb on - strand, within RALBFv3_RS16155at 67.309 kb on - strand, within RALBFv3_RS16155at 67.344 kb on + strand, within RALBFv3_RS16155at 67.344 kb on + strand, within RALBFv3_RS16155at 67.344 kb on + strand, within RALBFv3_RS16155at 67.344 kb on + strand, within RALBFv3_RS16155at 67.344 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155at 67.345 kb on - strand, within RALBFv3_RS16155at 67.530 kb on + strand, within RALBFv3_RS16155at 67.531 kb on - strand, within RALBFv3_RS16155at 67.593 kb on + strand, within RALBFv3_RS16155at 67.593 kb on + strand, within RALBFv3_RS16155at 67.594 kb on - strand, within RALBFv3_RS16155at 67.594 kb on - strand, within RALBFv3_RS16155at 67.594 kb on - strand, within RALBFv3_RS16155at 67.608 kb on + strand, within RALBFv3_RS16155at 67.609 kb on - strand, within RALBFv3_RS16155at 67.609 kb on - strand, within RALBFv3_RS16155at 67.710 kb on + strand, within RALBFv3_RS16155at 67.998 kb on + strand, within RALBFv3_RS16155at 67.998 kb on + strand, within RALBFv3_RS16155at 67.999 kb on - strand, within RALBFv3_RS16155at 68.000 kb on - strand, within RALBFv3_RS16155at 68.117 kb on + strand, within RALBFv3_RS16155at 68.118 kb on - strand, within RALBFv3_RS16155at 68.118 kb on - strand, within RALBFv3_RS16155at 68.118 kb on - strand, within RALBFv3_RS16155at 68.118 kb on - strand, within RALBFv3_RS16155at 68.118 kb on - strand, within RALBFv3_RS16155at 68.131 kb on - strand, within RALBFv3_RS16155at 68.250 kb on - strand, within RALBFv3_RS16155at 68.260 kb on + strand, within RALBFv3_RS16155at 68.260 kb on + strand, within RALBFv3_RS16155at 68.260 kb on + strand, within RALBFv3_RS16155at 68.260 kb on + strand, within RALBFv3_RS16155at 68.261 kb on - strand, within RALBFv3_RS16155at 68.261 kb on - strand, within RALBFv3_RS16155at 68.261 kb on - strand, within RALBFv3_RS16155at 68.261 kb on - strand, within RALBFv3_RS16155at 68.261 kb on - strand, within RALBFv3_RS16155at 68.265 kb on + strand, within RALBFv3_RS16155at 68.266 kb on - strand, within RALBFv3_RS16155at 68.293 kb on - strand, within RALBFv3_RS16155at 68.364 kb on + strand, within RALBFv3_RS16155at 68.365 kb on - strand, within RALBFv3_RS16155at 68.365 kb on - strand, within RALBFv3_RS16155at 68.581 kb on - strand, within RALBFv3_RS16155at 68.581 kb on - strand, within RALBFv3_RS16155at 68.581 kb on - strand, within RALBFv3_RS16155at 68.581 kb on - strand, within RALBFv3_RS16155at 68.581 kb on - strand, within RALBFv3_RS16155at 68.906 kb on - strand, within RALBFv3_RS16155at 68.906 kb on - strand, within RALBFv3_RS16155at 68.914 kb on + strand, within RALBFv3_RS16155at 68.915 kb on - strand, within RALBFv3_RS16155at 69.508 kb on + strandat 69.508 kb on + strandat 69.508 kb on + strandat 69.510 kb on - strandat 69.520 kb on + strandat 69.520 kb on + strandat 69.520 kb on + strandat 69.520 kb on + strandat 69.520 kb on + strandat 69.521 kb on - strandat 69.521 kb on - strandat 69.521 kb on - strandat 69.594 kb on + strand, within RALBFv3_RS16160at 69.594 kb on + strand, within RALBFv3_RS16160at 69.595 kb on - strand, within RALBFv3_RS16160at 69.601 kb on + strand, within RALBFv3_RS16160at 69.601 kb on + strand, within RALBFv3_RS16160at 69.601 kb on + strand, within RALBFv3_RS16160at 69.601 kb on + strand, within RALBFv3_RS16160at 69.601 kb on + strand, within RALBFv3_RS16160at 69.601 kb on + strand, within RALBFv3_RS16160at 69.601 kb on + strand, within RALBFv3_RS16160at 69.601 kb on + strand, within RALBFv3_RS16160at 69.602 kb on - strand, within RALBFv3_RS16160at 69.602 kb on - strand, within RALBFv3_RS16160at 69.602 kb on - strand, within RALBFv3_RS16160at 69.602 kb on - strand, within RALBFv3_RS16160at 69.602 kb on - strand, within RALBFv3_RS16160at 69.602 kb on - strand, within RALBFv3_RS16160at 69.602 kb on - strand, within RALBFv3_RS16160at 69.602 kb on - strand, within RALBFv3_RS16160at 69.619 kb on + strand, within RALBFv3_RS16160at 69.665 kb on - strand, within RALBFv3_RS16160at 69.709 kb on + strand, within RALBFv3_RS16160at 69.710 kb on - strand, within RALBFv3_RS16160at 69.715 kb on + strand, within RALBFv3_RS16160at 69.715 kb on + strand, within RALBFv3_RS16160at 69.716 kb on - strand, within RALBFv3_RS16160at 69.775 kb on + strand, within RALBFv3_RS16160at 69.776 kb on - strand, within RALBFv3_RS16160at 69.776 kb on - strand, within RALBFv3_RS16160at 69.913 kb on + strand, within RALBFv3_RS16160at 69.959 kb on - strand, within RALBFv3_RS16160at 69.959 kb on - strand, within RALBFv3_RS16160at 70.070 kb on + strand, within RALBFv3_RS16160at 70.071 kb on - strand, within RALBFv3_RS16160at 70.071 kb on - strand, within RALBFv3_RS16160at 70.071 kb on - strand, within RALBFv3_RS16160at 70.071 kb on - strand, within RALBFv3_RS16160at 70.072 kb on + strand, within RALBFv3_RS16160at 70.072 kb on + strand, within RALBFv3_RS16160at 70.072 kb on + strand, within RALBFv3_RS16160at 70.073 kb on - strand, within RALBFv3_RS16160at 70.073 kb on - strand, within RALBFv3_RS16160at 70.135 kb on + strand, within RALBFv3_RS16160at 70.135 kb on + strand, within RALBFv3_RS16160at 70.168 kb on + strand, within RALBFv3_RS16160at 70.168 kb on + strand, within RALBFv3_RS16160at 70.168 kb on + strand, within RALBFv3_RS16160at 70.168 kb on + strand, within RALBFv3_RS16160at 70.169 kb on - strand, within RALBFv3_RS16160at 70.169 kb on - strand, within RALBFv3_RS16160at 70.169 kb on - strand, within RALBFv3_RS16160

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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65,727 + RALBFv3_RS16150 0.50 -0.1
65,727 + RALBFv3_RS16150 0.50 +0.1
65,727 + RALBFv3_RS16150 0.50 -0.4
65,728 - RALBFv3_RS16150 0.50 +0.6
65,728 - RALBFv3_RS16150 0.50 -0.0
65,728 - RALBFv3_RS16150 0.50 +0.1
65,728 - RALBFv3_RS16150 0.50 +1.0
65,728 - RALBFv3_RS16150 0.50 +2.8
65,728 - RALBFv3_RS16150 0.50 -0.8
65,729 - RALBFv3_RS16150 0.50 -0.1
65,734 + RALBFv3_RS16150 0.50 -0.0
65,895 + RALBFv3_RS16150 0.61 +0.7
65,895 + RALBFv3_RS16150 0.61 +0.2
65,896 - RALBFv3_RS16150 0.61 +0.2
65,896 - RALBFv3_RS16150 0.61 -0.4
65,896 - RALBFv3_RS16150 0.61 +0.3
65,913 + RALBFv3_RS16150 0.63 +0.4
65,913 + RALBFv3_RS16150 0.63 -1.6
66,114 + RALBFv3_RS16150 0.76 +0.1
66,114 + RALBFv3_RS16150 0.76 -1.7
66,267 + RALBFv3_RS16150 0.86 +0.1
66,278 + RALBFv3_RS16150 0.87 +0.7
66,278 + RALBFv3_RS16150 0.87 -0.4
66,278 + RALBFv3_RS16150 0.87 +0.6
66,279 - RALBFv3_RS16150 0.87 -0.5
66,279 - RALBFv3_RS16150 0.87 +0.6
66,391 - -1.8
66,411 + +0.1
66,413 - +0.6
66,427 - +0.1
66,427 - -2.0
66,441 + +0.1
66,441 + -0.4
66,441 + -0.1
66,441 + -0.1
66,441 + -0.8
66,442 - -0.5
66,442 - +0.6
66,442 - +0.2
66,465 + -0.0
66,465 + +0.1
66,465 + -0.9
66,717 + -0.4
66,718 - -1.8
66,718 - -0.5
66,776 - -0.6
66,776 - -0.1
66,776 - -0.0
66,933 + RALBFv3_RS16155 0.10 -0.3
67,122 + RALBFv3_RS16155 0.18 +2.8
67,123 - RALBFv3_RS16155 0.18 -1.4
67,166 + RALBFv3_RS16155 0.20 -0.8
67,167 - RALBFv3_RS16155 0.20 +0.6
67,234 - RALBFv3_RS16155 0.22 +0.3
67,234 - RALBFv3_RS16155 0.22 -0.0
67,309 - RALBFv3_RS16155 0.25 +0.2
67,344 + RALBFv3_RS16155 0.27 -0.3
67,344 + RALBFv3_RS16155 0.27 +0.1
67,344 + RALBFv3_RS16155 0.27 -0.7
67,344 + RALBFv3_RS16155 0.27 -0.6
67,344 - RALBFv3_RS16155 0.27 -0.3
67,345 - RALBFv3_RS16155 0.27 -1.3
67,345 - RALBFv3_RS16155 0.27 -0.4
67,345 - RALBFv3_RS16155 0.27 -0.0
67,345 - RALBFv3_RS16155 0.27 +0.7
67,345 - RALBFv3_RS16155 0.27 -1.0
67,345 - RALBFv3_RS16155 0.27 +0.8
67,530 + RALBFv3_RS16155 0.34 +0.2
67,531 - RALBFv3_RS16155 0.34 +2.3
67,593 + RALBFv3_RS16155 0.37 +0.0
67,593 + RALBFv3_RS16155 0.37 -0.2
67,594 - RALBFv3_RS16155 0.37 +0.1
67,594 - RALBFv3_RS16155 0.37 -2.0
67,594 - RALBFv3_RS16155 0.37 +0.1
67,608 + RALBFv3_RS16155 0.37 +0.2
67,609 - RALBFv3_RS16155 0.37 +0.1
67,609 - RALBFv3_RS16155 0.37 -0.3
67,710 + RALBFv3_RS16155 0.41 -0.2
67,998 + RALBFv3_RS16155 0.53 +0.4
67,998 + RALBFv3_RS16155 0.53 +1.0
67,999 - RALBFv3_RS16155 0.53 +0.0
68,000 - RALBFv3_RS16155 0.53 -0.4
68,117 + RALBFv3_RS16155 0.57 -0.5
68,118 - RALBFv3_RS16155 0.57 +1.3
68,118 - RALBFv3_RS16155 0.57 -0.1
68,118 - RALBFv3_RS16155 0.57 -0.4
68,118 - RALBFv3_RS16155 0.57 +0.6
68,118 - RALBFv3_RS16155 0.57 -0.4
68,131 - RALBFv3_RS16155 0.58 -0.4
68,250 - RALBFv3_RS16155 0.63 +0.5
68,260 + RALBFv3_RS16155 0.63 +0.4
68,260 + RALBFv3_RS16155 0.63 -0.6
68,260 + RALBFv3_RS16155 0.63 -0.8
68,260 + RALBFv3_RS16155 0.63 -0.2
68,261 - RALBFv3_RS16155 0.63 -0.5
68,261 - RALBFv3_RS16155 0.63 -1.6
68,261 - RALBFv3_RS16155 0.63 -0.4
68,261 - RALBFv3_RS16155 0.63 +0.4
68,261 - RALBFv3_RS16155 0.63 -0.2
68,265 + RALBFv3_RS16155 0.63 -0.2
68,266 - RALBFv3_RS16155 0.63 +0.2
68,293 - RALBFv3_RS16155 0.64 -1.0
68,364 + RALBFv3_RS16155 0.67 +0.2
68,365 - RALBFv3_RS16155 0.67 +0.6
68,365 - RALBFv3_RS16155 0.67 -0.1
68,581 - RALBFv3_RS16155 0.76 +2.0
68,581 - RALBFv3_RS16155 0.76 -0.4
68,581 - RALBFv3_RS16155 0.76 -0.7
68,581 - RALBFv3_RS16155 0.76 -0.6
68,581 - RALBFv3_RS16155 0.76 -0.2
68,906 - RALBFv3_RS16155 0.89 -0.9
68,906 - RALBFv3_RS16155 0.89 +0.2
68,914 + RALBFv3_RS16155 0.89 -0.0
68,915 - RALBFv3_RS16155 0.89 +0.7
69,508 + -0.0
69,508 + +0.4
69,508 + -0.6
69,510 - -0.0
69,520 + -0.2
69,520 + -0.2
69,520 + -0.6
69,520 + +0.8
69,520 + -0.5
69,521 - -0.0
69,521 - -1.0
69,521 - +1.3
69,594 + RALBFv3_RS16160 0.14 -0.4
69,594 + RALBFv3_RS16160 0.14 +0.0
69,595 - RALBFv3_RS16160 0.14 -1.2
69,601 + RALBFv3_RS16160 0.15 -1.2
69,601 + RALBFv3_RS16160 0.15 -0.7
69,601 + RALBFv3_RS16160 0.15 -0.4
69,601 + RALBFv3_RS16160 0.15 +0.5
69,601 + RALBFv3_RS16160 0.15 -0.7
69,601 + RALBFv3_RS16160 0.15 -0.2
69,601 + RALBFv3_RS16160 0.15 -0.0
69,601 + RALBFv3_RS16160 0.15 -0.4
69,602 - RALBFv3_RS16160 0.15 -1.7
69,602 - RALBFv3_RS16160 0.15 -1.3
69,602 - RALBFv3_RS16160 0.15 +2.3
69,602 - RALBFv3_RS16160 0.15 -0.5
69,602 - RALBFv3_RS16160 0.15 +0.2
69,602 - RALBFv3_RS16160 0.15 -2.0
69,602 - RALBFv3_RS16160 0.15 -0.4
69,602 - RALBFv3_RS16160 0.15 -0.9
69,619 + RALBFv3_RS16160 0.16 +0.2
69,665 - RALBFv3_RS16160 0.19 -0.4
69,709 + RALBFv3_RS16160 0.22 +0.2
69,710 - RALBFv3_RS16160 0.22 +0.8
69,715 + RALBFv3_RS16160 0.23 -0.2
69,715 + RALBFv3_RS16160 0.23 +0.3
69,716 - RALBFv3_RS16160 0.23 -0.0
69,775 + RALBFv3_RS16160 0.27 +0.1
69,776 - RALBFv3_RS16160 0.27 -1.6
69,776 - RALBFv3_RS16160 0.27 +0.8
69,913 + RALBFv3_RS16160 0.36 -0.2
69,959 - RALBFv3_RS16160 0.40 -1.6
69,959 - RALBFv3_RS16160 0.40 +0.1
70,070 + RALBFv3_RS16160 0.47 -0.4
70,071 - RALBFv3_RS16160 0.47 +0.1
70,071 - RALBFv3_RS16160 0.47 -0.3
70,071 - RALBFv3_RS16160 0.47 -0.7
70,071 - RALBFv3_RS16160 0.47 -1.0
70,072 + RALBFv3_RS16160 0.48 -1.2
70,072 + RALBFv3_RS16160 0.48 +0.4
70,072 + RALBFv3_RS16160 0.48 +0.4
70,073 - RALBFv3_RS16160 0.48 -0.1
70,073 - RALBFv3_RS16160 0.48 -0.2
70,135 + RALBFv3_RS16160 0.52 -0.0
70,135 + RALBFv3_RS16160 0.52 +0.5
70,168 + RALBFv3_RS16160 0.54 -0.4
70,168 + RALBFv3_RS16160 0.54 -0.7
70,168 + RALBFv3_RS16160 0.54 -0.6
70,168 + RALBFv3_RS16160 0.54 -0.3
70,169 - RALBFv3_RS16160 0.54 +0.6
70,169 - RALBFv3_RS16160 0.54 -0.0
70,169 - RALBFv3_RS16160 0.54 +0.7

Or see this region's nucleotide sequence