Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15885

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15880 and RALBFv3_RS15885 are separated by 3 nucleotides RALBFv3_RS15880: RALBFv3_RS15880 - threonine synthase, at 3,457,933 to 3,459,453 _RS15880 RALBFv3_RS15885: RALBFv3_RS15885 - IclR family transcriptional regulator, at 3,459,457 to 3,460,077 _RS15885 Position (kb) 3459 3460 3461Strain fitness (log2 ratio) -1 0 1at 3459.450 kb on + strandat 3459.880 kb on + strand, within RALBFv3_RS15885at 3459.881 kb on - strand, within RALBFv3_RS15885at 3460.076 kb on - strandat 3460.114 kb on - strandat 3460.350 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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3,459,450 + -0.0
3,459,880 + RALBFv3_RS15885 0.68 +0.6
3,459,881 - RALBFv3_RS15885 0.68 +0.4
3,460,076 - +1.0
3,460,114 - -0.0
3,460,350 - +0.6

Or see this region's nucleotide sequence