Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15270

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15260 and RALBFv3_RS15265 overlap by 4 nucleotidesRALBFv3_RS15265 and RALBFv3_RS15270 overlap by 8 nucleotidesRALBFv3_RS15270 and RALBFv3_RS15275 are separated by 55 nucleotides RALBFv3_RS15260: RALBFv3_RS15260 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 3,322,510 to 3,323,661 _RS15260 RALBFv3_RS15265: RALBFv3_RS15265 - type IV pilus biogenesis/stability protein PilW, at 3,323,658 to 3,324,458 _RS15265 RALBFv3_RS15270: RALBFv3_RS15270 - DUF4115 domain-containing protein, at 3,324,451 to 3,325,554 _RS15270 RALBFv3_RS15275: RALBFv3_RS15275 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 3,325,610 to 3,326,905 _RS15275 Position (kb) 3324 3325 3326Strain fitness (log2 ratio) -1 0 1 2at 3324.018 kb on + strand, within RALBFv3_RS15265at 3324.712 kb on + strand, within RALBFv3_RS15270

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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3,324,018 + RALBFv3_RS15265 0.45 +1.8
3,324,712 + RALBFv3_RS15270 0.24 +0.6

Or see this region's nucleotide sequence