Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS14950 and RALBFv3_RS14955 overlap by 4 nucleotides RALBFv3_RS14955 and RALBFv3_RS14960 are separated by 92 nucleotides RALBFv3_RS14960 and RALBFv3_RS14965 are separated by 46 nucleotides RALBFv3_RS14965 and RALBFv3_RS14970 are separated by 111 nucleotides
RALBFv3_RS14950: RALBFv3_RS14950 - MOSC domain-containing protein, at 3,258,883 to 3,259,608
_RS14950
RALBFv3_RS14955: RALBFv3_RS14955 - glutamine amidotransferase, at 3,259,605 to 3,260,327
_RS14955
RALBFv3_RS14960: RALBFv3_RS14960 - XRE family transcriptional regulator, at 3,260,420 to 3,260,968
_RS14960
RALBFv3_RS14965: RALBFv3_RS14965 - inositol monophosphatase, at 3,261,015 to 3,261,827
_RS14965
RALBFv3_RS14970: RALBFv3_RS14970 - RNA methyltransferase, at 3,261,939 to 3,262,802
_RS14970
Position (kb)
3260
3261 Strain fitness (log2 ratio)
-1
0
1
2 at 3259.550 kb on + strand at 3259.550 kb on + strand at 3259.551 kb on - strand at 3259.551 kb on - strand at 3260.340 kb on + strand at 3260.379 kb on + strand at 3260.380 kb on - strand at 3260.504 kb on + strand, within RALBFv3_RS14960 at 3260.738 kb on + strand, within RALBFv3_RS14960 at 3261.936 kb on + strand at 3261.936 kb on + strand at 3261.936 kb on + strand at 3261.937 kb on - strand at 3261.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 3,259,550 + +0.0 3,259,550 + +2.6 3,259,551 - +1.0 3,259,551 - +0.6 3,260,340 + -0.0 3,260,379 + -0.1 3,260,380 - +0.4 3,260,504 + RALBFv3_RS14960 0.15 +1.6 3,260,738 + RALBFv3_RS14960 0.58 -0.4 3,261,936 + +0.3 3,261,936 + -0.6 3,261,936 + -0.0 3,261,937 - +0.2 3,261,938 + -0.3
Or see this region's nucleotide sequence