Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS14960

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS14950 and RALBFv3_RS14955 overlap by 4 nucleotidesRALBFv3_RS14955 and RALBFv3_RS14960 are separated by 92 nucleotidesRALBFv3_RS14960 and RALBFv3_RS14965 are separated by 46 nucleotidesRALBFv3_RS14965 and RALBFv3_RS14970 are separated by 111 nucleotides RALBFv3_RS14950: RALBFv3_RS14950 - MOSC domain-containing protein, at 3,258,883 to 3,259,608 _RS14950 RALBFv3_RS14955: RALBFv3_RS14955 - glutamine amidotransferase, at 3,259,605 to 3,260,327 _RS14955 RALBFv3_RS14960: RALBFv3_RS14960 - XRE family transcriptional regulator, at 3,260,420 to 3,260,968 _RS14960 RALBFv3_RS14965: RALBFv3_RS14965 - inositol monophosphatase, at 3,261,015 to 3,261,827 _RS14965 RALBFv3_RS14970: RALBFv3_RS14970 - RNA methyltransferase, at 3,261,939 to 3,262,802 _RS14970 Position (kb) 3260 3261Strain fitness (log2 ratio) -1 0 1 2at 3259.550 kb on + strandat 3259.550 kb on + strandat 3259.551 kb on - strandat 3259.551 kb on - strandat 3260.340 kb on + strandat 3260.379 kb on + strandat 3260.380 kb on - strandat 3260.504 kb on + strand, within RALBFv3_RS14960at 3260.738 kb on + strand, within RALBFv3_RS14960at 3261.936 kb on + strandat 3261.936 kb on + strandat 3261.936 kb on + strandat 3261.937 kb on - strandat 3261.938 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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3,259,550 + +0.0
3,259,550 + +2.6
3,259,551 - +1.0
3,259,551 - +0.6
3,260,340 + -0.0
3,260,379 + -0.1
3,260,380 - +0.4
3,260,504 + RALBFv3_RS14960 0.15 +1.6
3,260,738 + RALBFv3_RS14960 0.58 -0.4
3,261,936 + +0.3
3,261,936 + -0.6
3,261,936 + -0.0
3,261,937 - +0.2
3,261,938 + -0.3

Or see this region's nucleotide sequence