Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS14845

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS14840 and RALBFv3_RS14845 are separated by 10 nucleotidesRALBFv3_RS14845 and RALBFv3_RS14850 overlap by 4 nucleotidesRALBFv3_RS14850 and RALBFv3_RS14855 overlap by 4 nucleotides RALBFv3_RS14840: RALBFv3_RS14840 - alpha/beta hydrolase, at 3,234,328 to 3,235,245 _RS14840 RALBFv3_RS14845: RALBFv3_RS14845 - thiol-disulfide oxidoreductase DCC family protein, at 3,235,256 to 3,235,645 _RS14845 RALBFv3_RS14850: RALBFv3_RS14850 - DUF4166 domain-containing protein, at 3,235,642 to 3,236,184 _RS14850 RALBFv3_RS14855: RALBFv3_RS14855 - membrane protein, at 3,236,181 to 3,237,308 _RS14855 Position (kb) 3235 3236Strain fitness (log2 ratio) -1 0 1at 3234.280 kb on - strandat 3234.340 kb on - strandat 3234.377 kb on - strandat 3234.517 kb on - strand, within RALBFv3_RS14840at 3234.542 kb on - strand, within RALBFv3_RS14840at 3234.634 kb on + strand, within RALBFv3_RS14840at 3234.839 kb on - strand, within RALBFv3_RS14840at 3235.350 kb on + strand, within RALBFv3_RS14845at 3235.350 kb on + strand, within RALBFv3_RS14845at 3235.351 kb on - strand, within RALBFv3_RS14845at 3235.518 kb on + strand, within RALBFv3_RS14845at 3235.893 kb on + strand, within RALBFv3_RS14850at 3235.893 kb on + strand, within RALBFv3_RS14850at 3235.893 kb on + strand, within RALBFv3_RS14850at 3235.894 kb on - strand, within RALBFv3_RS14850at 3236.123 kb on - strand, within RALBFv3_RS14850at 3236.144 kb on + strandat 3236.338 kb on + strand, within RALBFv3_RS14855at 3236.339 kb on - strand, within RALBFv3_RS14855

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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3,234,280 - -0.8
3,234,340 - -0.5
3,234,377 - +0.3
3,234,517 - RALBFv3_RS14840 0.21 -0.7
3,234,542 - RALBFv3_RS14840 0.23 -0.3
3,234,634 + RALBFv3_RS14840 0.33 +0.4
3,234,839 - RALBFv3_RS14840 0.56 -0.5
3,235,350 + RALBFv3_RS14845 0.24 +0.0
3,235,350 + RALBFv3_RS14845 0.24 -0.0
3,235,351 - RALBFv3_RS14845 0.24 +1.1
3,235,518 + RALBFv3_RS14845 0.67 +1.0
3,235,893 + RALBFv3_RS14850 0.46 +0.1
3,235,893 + RALBFv3_RS14850 0.46 +0.3
3,235,893 + RALBFv3_RS14850 0.46 -0.1
3,235,894 - RALBFv3_RS14850 0.46 +1.0
3,236,123 - RALBFv3_RS14850 0.89 +0.0
3,236,144 + +0.1
3,236,338 + RALBFv3_RS14855 0.14 +0.2
3,236,339 - RALBFv3_RS14855 0.14 +0.1

Or see this region's nucleotide sequence