Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS13175

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS13160 and RALBFv3_RS13165 are separated by 73 nucleotidesRALBFv3_RS13165 and RALBFv3_RS13170 are separated by 41 nucleotidesRALBFv3_RS13170 and RALBFv3_RS13175 are separated by 7 nucleotidesRALBFv3_RS13175 and RALBFv3_RS13180 are separated by 44 nucleotides RALBFv3_RS13160: RALBFv3_RS13160 - DUF3999 domain-containing protein, at 2,886,799 to 2,888,151 _RS13160 RALBFv3_RS13165: RALBFv3_RS13165 - membrane protein, at 2,888,225 to 2,888,608 _RS13165 RALBFv3_RS13170: RALBFv3_RS13170 - RNA-binding protein, at 2,888,650 to 2,888,871 _RS13170 RALBFv3_RS13175: RALBFv3_RS13175 - polyisoprenoid-binding protein, at 2,888,879 to 2,889,448 _RS13175 RALBFv3_RS13180: RALBFv3_RS13180 - glutamine--tRNA ligase, at 2,889,493 to 2,891,235 _RS13180 Position (kb) 2888 2889 2890Strain fitness (log2 ratio) -1 0 1at 2888.150 kb on - strandat 2888.332 kb on - strand, within RALBFv3_RS13165at 2888.563 kb on - strand, within RALBFv3_RS13165at 2888.564 kb on - strand, within RALBFv3_RS13165at 2888.837 kb on + strand, within RALBFv3_RS13170at 2888.838 kb on - strand, within RALBFv3_RS13170at 2889.032 kb on - strand, within RALBFv3_RS13175at 2889.494 kb on + strandat 2889.494 kb on + strandat 2889.494 kb on + strandat 2889.494 kb on + strandat 2889.494 kb on + strandat 2889.494 kb on + strandat 2889.495 kb on - strandat 2889.495 kb on - strandat 2889.495 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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2,888,150 - +0.0
2,888,332 - RALBFv3_RS13165 0.28 -0.5
2,888,563 - RALBFv3_RS13165 0.88 +0.6
2,888,564 - RALBFv3_RS13165 0.88 +0.0
2,888,837 + RALBFv3_RS13170 0.84 -0.8
2,888,838 - RALBFv3_RS13170 0.85 +0.5
2,889,032 - RALBFv3_RS13175 0.27 +0.5
2,889,494 + -0.4
2,889,494 + -0.9
2,889,494 + -0.6
2,889,494 + +0.4
2,889,494 + -0.5
2,889,494 + +0.0
2,889,495 - +0.9
2,889,495 - -0.0
2,889,495 - +0.5

Or see this region's nucleotide sequence