Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS13045 and RALBFv3_RS13050 are separated by 159 nucleotides RALBFv3_RS13050 and RALBFv3_RS13055 are separated by 86 nucleotides RALBFv3_RS13055 and RALBFv3_RS13060 are separated by 9 nucleotides RALBFv3_RS13060 and RALBFv3_RS13065 are separated by 229 nucleotides RALBFv3_RS13065 and RALBFv3_RS13070 are separated by 32 nucleotides
RALBFv3_RS13045: RALBFv3_RS13045 - arylformamidase, at 2,862,183 to 2,862,812
_RS13045
RALBFv3_RS13050: RALBFv3_RS13050 - Lrp/AsnC family transcriptional regulator, at 2,862,972 to 2,863,496
_RS13050
RALBFv3_RS13055: RALBFv3_RS13055 - DUF3079 domain-containing protein, at 2,863,583 to 2,863,789
_RS13055
RALBFv3_RS13060: RALBFv3_RS13060 - flavin reductase, at 2,863,799 to 2,864,371
_RS13060
RALBFv3_RS13065: RALBFv3_RS13065 - peptide-methionine (S)-S-oxide reductase, at 2,864,601 to 2,865,161
_RS13065
RALBFv3_RS13070: RALBFv3_RS13070 - DUF72 domain-containing protein, at 2,865,194 to 2,866,261
_RS13070
Position (kb)
2863
2864
2865 Strain fitness (log2 ratio)
-2
-1
0
1 at 2863.287 kb on + strand, within RALBFv3_RS13050 at 2863.287 kb on + strand, within RALBFv3_RS13050 at 2863.287 kb on + strand, within RALBFv3_RS13050 at 2863.287 kb on + strand, within RALBFv3_RS13050 at 2863.288 kb on - strand, within RALBFv3_RS13050 at 2863.288 kb on - strand, within RALBFv3_RS13050 at 2863.288 kb on - strand, within RALBFv3_RS13050 at 2863.324 kb on - strand, within RALBFv3_RS13050 at 2863.324 kb on - strand, within RALBFv3_RS13050 at 2863.324 kb on - strand, within RALBFv3_RS13050 at 2863.324 kb on - strand, within RALBFv3_RS13050 at 2863.350 kb on + strand, within RALBFv3_RS13050 at 2863.646 kb on + strand, within RALBFv3_RS13055 at 2863.646 kb on + strand, within RALBFv3_RS13055 at 2863.647 kb on - strand, within RALBFv3_RS13055 at 2863.647 kb on - strand, within RALBFv3_RS13055 at 2863.727 kb on + strand, within RALBFv3_RS13055 at 2863.727 kb on + strand, within RALBFv3_RS13055 at 2864.085 kb on + strand, within RALBFv3_RS13060 at 2864.085 kb on + strand, within RALBFv3_RS13060 at 2864.085 kb on + strand, within RALBFv3_RS13060 at 2864.086 kb on - strand, within RALBFv3_RS13060 at 2864.309 kb on - strand, within RALBFv3_RS13060 at 2864.425 kb on + strand at 2864.426 kb on - strand at 2864.544 kb on - strand at 2864.710 kb on - strand, within RALBFv3_RS13065 at 2864.740 kb on - strand, within RALBFv3_RS13065 at 2864.895 kb on + strand, within RALBFv3_RS13065 at 2864.895 kb on + strand, within RALBFv3_RS13065 at 2865.064 kb on - strand, within RALBFv3_RS13065 at 2865.064 kb on - strand, within RALBFv3_RS13065 at 2865.064 kb on - strand, within RALBFv3_RS13065 at 2865.090 kb on + strand, within RALBFv3_RS13065 at 2865.091 kb on - strand, within RALBFv3_RS13065 at 2865.159 kb on + strand at 2865.159 kb on + strand at 2865.160 kb on - strand at 2865.160 kb on - strand at 2865.160 kb on - strand at 2865.195 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 2,863,287 + RALBFv3_RS13050 0.60 -0.0 2,863,287 + RALBFv3_RS13050 0.60 -0.3 2,863,287 + RALBFv3_RS13050 0.60 -0.2 2,863,287 + RALBFv3_RS13050 0.60 -1.2 2,863,288 - RALBFv3_RS13050 0.60 -0.1 2,863,288 - RALBFv3_RS13050 0.60 +0.8 2,863,288 - RALBFv3_RS13050 0.60 -0.9 2,863,324 - RALBFv3_RS13050 0.67 +1.1 2,863,324 - RALBFv3_RS13050 0.67 -1.5 2,863,324 - RALBFv3_RS13050 0.67 -1.5 2,863,324 - RALBFv3_RS13050 0.67 -0.0 2,863,350 + RALBFv3_RS13050 0.72 -0.9 2,863,646 + RALBFv3_RS13055 0.30 +0.4 2,863,646 + RALBFv3_RS13055 0.30 +0.3 2,863,647 - RALBFv3_RS13055 0.31 +0.2 2,863,647 - RALBFv3_RS13055 0.31 -1.3 2,863,727 + RALBFv3_RS13055 0.70 +0.4 2,863,727 + RALBFv3_RS13055 0.70 -0.3 2,864,085 + RALBFv3_RS13060 0.50 -0.1 2,864,085 + RALBFv3_RS13060 0.50 +0.8 2,864,085 + RALBFv3_RS13060 0.50 +1.1 2,864,086 - RALBFv3_RS13060 0.50 +1.4 2,864,309 - RALBFv3_RS13060 0.89 +0.1 2,864,425 + -0.9 2,864,426 - -0.2 2,864,544 - +0.1 2,864,710 - RALBFv3_RS13065 0.19 -0.4 2,864,740 - RALBFv3_RS13065 0.25 +0.0 2,864,895 + RALBFv3_RS13065 0.52 -0.4 2,864,895 + RALBFv3_RS13065 0.52 +0.0 2,865,064 - RALBFv3_RS13065 0.83 +0.1 2,865,064 - RALBFv3_RS13065 0.83 -1.2 2,865,064 - RALBFv3_RS13065 0.83 +0.3 2,865,090 + RALBFv3_RS13065 0.87 +0.6 2,865,091 - RALBFv3_RS13065 0.87 +0.1 2,865,159 + +0.0 2,865,159 + -2.3 2,865,160 - +0.1 2,865,160 - +0.6 2,865,160 - -1.3 2,865,195 + -1.3
Or see this region's nucleotide sequence