Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS13060

Experiment: CPG

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS13045 and RALBFv3_RS13050 are separated by 159 nucleotidesRALBFv3_RS13050 and RALBFv3_RS13055 are separated by 86 nucleotidesRALBFv3_RS13055 and RALBFv3_RS13060 are separated by 9 nucleotidesRALBFv3_RS13060 and RALBFv3_RS13065 are separated by 229 nucleotidesRALBFv3_RS13065 and RALBFv3_RS13070 are separated by 32 nucleotides RALBFv3_RS13045: RALBFv3_RS13045 - arylformamidase, at 2,862,183 to 2,862,812 _RS13045 RALBFv3_RS13050: RALBFv3_RS13050 - Lrp/AsnC family transcriptional regulator, at 2,862,972 to 2,863,496 _RS13050 RALBFv3_RS13055: RALBFv3_RS13055 - DUF3079 domain-containing protein, at 2,863,583 to 2,863,789 _RS13055 RALBFv3_RS13060: RALBFv3_RS13060 - flavin reductase, at 2,863,799 to 2,864,371 _RS13060 RALBFv3_RS13065: RALBFv3_RS13065 - peptide-methionine (S)-S-oxide reductase, at 2,864,601 to 2,865,161 _RS13065 RALBFv3_RS13070: RALBFv3_RS13070 - DUF72 domain-containing protein, at 2,865,194 to 2,866,261 _RS13070 Position (kb) 2863 2864 2865Strain fitness (log2 ratio) -2 -1 0 1at 2863.287 kb on + strand, within RALBFv3_RS13050at 2863.287 kb on + strand, within RALBFv3_RS13050at 2863.287 kb on + strand, within RALBFv3_RS13050at 2863.287 kb on + strand, within RALBFv3_RS13050at 2863.288 kb on - strand, within RALBFv3_RS13050at 2863.288 kb on - strand, within RALBFv3_RS13050at 2863.288 kb on - strand, within RALBFv3_RS13050at 2863.324 kb on - strand, within RALBFv3_RS13050at 2863.324 kb on - strand, within RALBFv3_RS13050at 2863.324 kb on - strand, within RALBFv3_RS13050at 2863.324 kb on - strand, within RALBFv3_RS13050at 2863.350 kb on + strand, within RALBFv3_RS13050at 2863.646 kb on + strand, within RALBFv3_RS13055at 2863.646 kb on + strand, within RALBFv3_RS13055at 2863.647 kb on - strand, within RALBFv3_RS13055at 2863.647 kb on - strand, within RALBFv3_RS13055at 2863.727 kb on + strand, within RALBFv3_RS13055at 2863.727 kb on + strand, within RALBFv3_RS13055at 2864.085 kb on + strand, within RALBFv3_RS13060at 2864.085 kb on + strand, within RALBFv3_RS13060at 2864.085 kb on + strand, within RALBFv3_RS13060at 2864.086 kb on - strand, within RALBFv3_RS13060at 2864.309 kb on - strand, within RALBFv3_RS13060at 2864.425 kb on + strandat 2864.426 kb on - strandat 2864.544 kb on - strandat 2864.710 kb on - strand, within RALBFv3_RS13065at 2864.740 kb on - strand, within RALBFv3_RS13065at 2864.895 kb on + strand, within RALBFv3_RS13065at 2864.895 kb on + strand, within RALBFv3_RS13065at 2865.064 kb on - strand, within RALBFv3_RS13065at 2865.064 kb on - strand, within RALBFv3_RS13065at 2865.064 kb on - strand, within RALBFv3_RS13065at 2865.090 kb on + strand, within RALBFv3_RS13065at 2865.091 kb on - strand, within RALBFv3_RS13065at 2865.159 kb on + strandat 2865.159 kb on + strandat 2865.160 kb on - strandat 2865.160 kb on - strandat 2865.160 kb on - strandat 2865.195 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CPG
remove
2,863,287 + RALBFv3_RS13050 0.60 -0.0
2,863,287 + RALBFv3_RS13050 0.60 -0.3
2,863,287 + RALBFv3_RS13050 0.60 -0.2
2,863,287 + RALBFv3_RS13050 0.60 -1.2
2,863,288 - RALBFv3_RS13050 0.60 -0.1
2,863,288 - RALBFv3_RS13050 0.60 +0.8
2,863,288 - RALBFv3_RS13050 0.60 -0.9
2,863,324 - RALBFv3_RS13050 0.67 +1.1
2,863,324 - RALBFv3_RS13050 0.67 -1.5
2,863,324 - RALBFv3_RS13050 0.67 -1.5
2,863,324 - RALBFv3_RS13050 0.67 -0.0
2,863,350 + RALBFv3_RS13050 0.72 -0.9
2,863,646 + RALBFv3_RS13055 0.30 +0.4
2,863,646 + RALBFv3_RS13055 0.30 +0.3
2,863,647 - RALBFv3_RS13055 0.31 +0.2
2,863,647 - RALBFv3_RS13055 0.31 -1.3
2,863,727 + RALBFv3_RS13055 0.70 +0.4
2,863,727 + RALBFv3_RS13055 0.70 -0.3
2,864,085 + RALBFv3_RS13060 0.50 -0.1
2,864,085 + RALBFv3_RS13060 0.50 +0.8
2,864,085 + RALBFv3_RS13060 0.50 +1.1
2,864,086 - RALBFv3_RS13060 0.50 +1.4
2,864,309 - RALBFv3_RS13060 0.89 +0.1
2,864,425 + -0.9
2,864,426 - -0.2
2,864,544 - +0.1
2,864,710 - RALBFv3_RS13065 0.19 -0.4
2,864,740 - RALBFv3_RS13065 0.25 +0.0
2,864,895 + RALBFv3_RS13065 0.52 -0.4
2,864,895 + RALBFv3_RS13065 0.52 +0.0
2,865,064 - RALBFv3_RS13065 0.83 +0.1
2,865,064 - RALBFv3_RS13065 0.83 -1.2
2,865,064 - RALBFv3_RS13065 0.83 +0.3
2,865,090 + RALBFv3_RS13065 0.87 +0.6
2,865,091 - RALBFv3_RS13065 0.87 +0.1
2,865,159 + +0.0
2,865,159 + -2.3
2,865,160 - +0.1
2,865,160 - +0.6
2,865,160 - -1.3
2,865,195 + -1.3

Or see this region's nucleotide sequence