Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS12870

Experiment: CPG

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	CPG
2,827,487	-		RALBFv3_RS12860	0.20	-1.5
2,827,538	+		RALBFv3_RS12860	0.29	+1.0
2,827,564	+		RALBFv3_RS12860	0.33	+0.3
2,827,564	+		RALBFv3_RS12860	0.33	+0.7
2,827,564	+		RALBFv3_RS12860	0.33	+0.7
2,827,564	+		RALBFv3_RS12860	0.33	+1.1
2,827,565	-		RALBFv3_RS12860	0.33	+0.7
2,827,612	+		RALBFv3_RS12860	0.41	-1.2
2,827,612	+		RALBFv3_RS12860	0.41	+0.5
2,827,612	+		RALBFv3_RS12860	0.41	+1.1
2,827,613	-		RALBFv3_RS12860	0.41	+0.3
2,827,678	+		RALBFv3_RS12860	0.52	+0.7
2,827,679	-		RALBFv3_RS12860	0.52	-0.3
2,827,679	-		RALBFv3_RS12860	0.52	+1.5
2,827,679	-		RALBFv3_RS12860	0.52	+0.3
2,827,759	+		RALBFv3_RS12860	0.65	+0.2
2,827,997	-				-0.6
2,828,172	+		RALBFv3_RS12865	0.40	+1.2
2,828,172	+		RALBFv3_RS12865	0.40	+0.7
2,828,202	+		RALBFv3_RS12865	0.46	-0.5
2,828,254	-		RALBFv3_RS12865	0.57	+0.9
2,828,254	-		RALBFv3_RS12865	0.57	+1.1
2,828,254	-		RALBFv3_RS12865	0.57	+0.1
2,828,350	+		RALBFv3_RS12865	0.76	+0.1
2,828,350	+		RALBFv3_RS12865	0.76	+0.3
2,828,351	-		RALBFv3_RS12865	0.77	-1.9
2,828,353	-		RALBFv3_RS12865	0.77	+0.6
2,828,547	+				+1.0
2,828,548	-				+1.2
2,828,548	-				-0.2
2,828,750	-				+0.6
2,828,754	-				+0.2
2,828,899	+		RALBFv3_RS12870	0.11	+0.5
2,828,911	+		RALBFv3_RS12870	0.11	+0.7
2,828,925	-		RALBFv3_RS12870	0.11	+0.3
2,828,932	+		RALBFv3_RS12870	0.12	+0.5
2,828,932	+		RALBFv3_RS12870	0.12	+0.7
2,828,995	+		RALBFv3_RS12870	0.13	+1.3
2,828,996	-		RALBFv3_RS12870	0.13	+0.8
2,828,996	-		RALBFv3_RS12870	0.13	+0.4
2,829,020	-		RALBFv3_RS12870	0.14	+1.4
2,829,073	+		RALBFv3_RS12870	0.15	-0.8
2,829,104	-		RALBFv3_RS12870	0.16	+0.1
2,829,104	-		RALBFv3_RS12870	0.16	+0.1
2,829,104	-		RALBFv3_RS12870	0.16	+0.3
2,829,118	+		RALBFv3_RS12870	0.16	+0.1
2,829,118	+		RALBFv3_RS12870	0.16	-0.1
2,829,292	+		RALBFv3_RS12870	0.21	+0.8
2,829,292	+		RALBFv3_RS12870	0.21	+0.5
2,829,293	-		RALBFv3_RS12870	0.21	-0.5
2,829,361	+		RALBFv3_RS12870	0.23	+0.3
2,829,400	+		RALBFv3_RS12870	0.24	+0.4
2,829,403	+		RALBFv3_RS12870	0.24	+0.6
2,829,404	-		RALBFv3_RS12870	0.24	+3.1
2,829,541	+		RALBFv3_RS12870	0.27	+0.5
2,829,830	+		RALBFv3_RS12870	0.35	+0.6
2,829,830	+		RALBFv3_RS12870	0.35	-0.1
2,829,831	-		RALBFv3_RS12870	0.35	+1.2
2,829,831	-		RALBFv3_RS12870	0.35	+0.4
2,829,831	-		RALBFv3_RS12870	0.35	+0.7
2,829,874	+		RALBFv3_RS12870	0.36	+0.8
2,829,875	-		RALBFv3_RS12870	0.36	-0.0
2,829,875	-		RALBFv3_RS12870	0.36	+1.0
2,829,875	-		RALBFv3_RS12870	0.36	+0.3
2,829,941	-		RALBFv3_RS12870	0.37	+0.0
2,829,964	+		RALBFv3_RS12870	0.38	+0.8
2,829,965	-		RALBFv3_RS12870	0.38	+0.3
2,829,965	-		RALBFv3_RS12870	0.38	+1.7
2,829,965	-		RALBFv3_RS12870	0.38	+0.5
2,829,965	-		RALBFv3_RS12870	0.38	-2.7
2,829,985	+		RALBFv3_RS12870	0.39	+0.9
2,830,080	-		RALBFv3_RS12870	0.41	+0.8
2,830,082	-		RALBFv3_RS12870	0.41	+0.6
2,830,109	+		RALBFv3_RS12870	0.42	+2.2
2,830,260	-		RALBFv3_RS12870	0.46	+0.3
2,830,261	+		RALBFv3_RS12870	0.46	+1.3
2,830,262	-		RALBFv3_RS12870	0.46	-0.1
2,830,421	+		RALBFv3_RS12870	0.50	+0.7
2,830,421	+		RALBFv3_RS12870	0.50	+0.8
2,830,422	-		RALBFv3_RS12870	0.50	+0.8
2,830,422	-		RALBFv3_RS12870	0.50	+1.7
2,830,422	-		RALBFv3_RS12870	0.50	+1.0
2,830,423	+		RALBFv3_RS12870	0.50	+1.5
2,830,424	-		RALBFv3_RS12870	0.50	+0.8
2,830,505	-		RALBFv3_RS12870	0.52	+0.9
2,830,521	-		RALBFv3_RS12870	0.52	+0.8
2,830,579	+		RALBFv3_RS12870	0.54	+0.5
2,830,580	-		RALBFv3_RS12870	0.54	+0.2
2,830,580	-		RALBFv3_RS12870	0.54	+0.2
2,830,580	-		RALBFv3_RS12870	0.54	+0.8
2,830,699	+		RALBFv3_RS12870	0.57	+0.8
2,830,822	+		RALBFv3_RS12870	0.60	+2.5
2,830,822	+		RALBFv3_RS12870	0.60	+0.5
2,830,823	-		RALBFv3_RS12870	0.60	+1.6
2,830,823	-		RALBFv3_RS12870	0.60	+0.1
2,830,823	-		RALBFv3_RS12870	0.60	+0.1
2,830,853	+		RALBFv3_RS12870	0.61	+0.7
2,830,853	+		RALBFv3_RS12870	0.61	-0.9
2,830,854	-		RALBFv3_RS12870	0.61	-1.1
2,830,855	+		RALBFv3_RS12870	0.61	-0.2
2,830,855	+		RALBFv3_RS12870	0.61	+0.8
2,830,855	+		RALBFv3_RS12870	0.61	+0.6
2,830,856	-		RALBFv3_RS12870	0.61	+0.3
2,830,856	-		RALBFv3_RS12870	0.61	+0.9
2,830,856	-		RALBFv3_RS12870	0.61	+0.7
2,830,858	+		RALBFv3_RS12870	0.61	+0.8
2,830,859	-		RALBFv3_RS12870	0.61	+1.2
2,830,859	-		RALBFv3_RS12870	0.61	+0.6
2,830,859	-		RALBFv3_RS12870	0.61	+0.4
2,830,859	-		RALBFv3_RS12870	0.61	+0.6
2,830,859	-		RALBFv3_RS12870	0.61	+0.9
2,831,057	-		RALBFv3_RS12870	0.66	+0.3
2,831,057	-		RALBFv3_RS12870	0.66	+0.5
2,831,057	-		RALBFv3_RS12870	0.66	-0.3
2,831,098	+		RALBFv3_RS12870	0.67	+0.8
2,831,098	+		RALBFv3_RS12870	0.67	+0.7
2,831,098	+		RALBFv3_RS12870	0.67	+0.4
2,831,098	+		RALBFv3_RS12870	0.67	+0.6
2,831,099	-		RALBFv3_RS12870	0.67	-0.4
2,831,099	-		RALBFv3_RS12870	0.67	-0.6
2,831,103	-		RALBFv3_RS12870	0.67	+0.8
2,831,160	-		RALBFv3_RS12870	0.69	+1.0
2,831,234	-		RALBFv3_RS12870	0.71	+0.3
2,831,258	-		RALBFv3_RS12870	0.71	+0.4
2,831,280	+		RALBFv3_RS12870	0.72	-0.2
2,831,281	+		RALBFv3_RS12870	0.72	+0.7
2,831,380	+		RALBFv3_RS12870	0.74	+0.8
2,831,512	+		RALBFv3_RS12870	0.78	-0.6
2,831,512	+		RALBFv3_RS12870	0.78	+1.3
2,831,513	-		RALBFv3_RS12870	0.78	+1.8
2,831,616	+		RALBFv3_RS12870	0.80	+0.7
2,831,635	+		RALBFv3_RS12870	0.81	+0.7
2,831,636	-		RALBFv3_RS12870	0.81	+0.8
2,831,636	-		RALBFv3_RS12870	0.81	+0.8
2,831,647	+		RALBFv3_RS12870	0.81	+0.8
2,831,648	-		RALBFv3_RS12870	0.81	-0.4
2,831,755	+		RALBFv3_RS12870	0.84	+0.4
2,831,877	+		RALBFv3_RS12870	0.87	-0.3
2,831,897	-		RALBFv3_RS12870	0.88	+0.6
2,831,897	-		RALBFv3_RS12870	0.88	+0.5
2,831,978	+		RALBFv3_RS12870	0.90	+0.9
2,831,978	+		RALBFv3_RS12870	0.90	+1.4
2,832,086	+				+0.7
2,832,086	+				+1.1
2,832,136	+				+0.6
2,832,137	-				+0.5
2,832,137	-				-0.5
2,832,164	-				+0.1
2,832,173	-				+0.5
2,832,173	-				+0.3
2,832,190	+				+0.1
2,832,203	-				-0.7
2,832,336	-				-0.7
2,832,430	-				+0.2
2,832,493	+				+1.5
2,832,524	-				+0.5
2,832,559	+		RALBFv3_RS12875	0.14	+0.1
2,832,559	+		RALBFv3_RS12875	0.14	+1.3
2,832,559	+		RALBFv3_RS12875	0.14	-0.7
2,832,643	+		RALBFv3_RS12875	0.27	+1.1
2,832,666	+		RALBFv3_RS12875	0.30	+0.6
2,832,666	+		RALBFv3_RS12875	0.30	+0.3
2,832,666	+		RALBFv3_RS12875	0.30	+0.7
2,832,666	+		RALBFv3_RS12875	0.30	+0.8
2,832,667	-		RALBFv3_RS12875	0.30	+1.6
2,832,667	-		RALBFv3_RS12875	0.30	+0.5
2,832,667	-		RALBFv3_RS12875	0.30	+0.7
2,832,667	-		RALBFv3_RS12875	0.30	+1.4
2,832,765	-		RALBFv3_RS12875	0.45	+1.1
2,832,788	+		RALBFv3_RS12875	0.48	+0.4
2,832,789	-		RALBFv3_RS12875	0.49	+0.2
2,832,792	+		RALBFv3_RS12875	0.49	+0.4
2,832,793	-		RALBFv3_RS12875	0.49	+1.7
2,832,793	-		RALBFv3_RS12875	0.49	-0.2
2,832,793	-		RALBFv3_RS12875	0.49	+1.2
2,833,169	+				+0.4
2,833,169	+				+1.1
2,833,170	-				+1.2
2,833,269	+		RALBFv3_RS12880	0.15	+0.7