Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS10910 and RALBFv3_RS10915 are separated by 151 nucleotides RALBFv3_RS10915 and RALBFv3_RS10920 are separated by 87 nucleotides RALBFv3_RS10920 and RALBFv3_RS10925 are separated by 19 nucleotides RALBFv3_RS10925 and RALBFv3_RS10930 are separated by 99 nucleotides
RALBFv3_RS10910: RALBFv3_RS10910 - glutaredoxin 3, at 2,414,824 to 2,415,081
_RS10910
RALBFv3_RS10915: RALBFv3_RS10915 - protein-export chaperone SecB, at 2,415,233 to 2,415,754
_RS10915
RALBFv3_RS10920: RALBFv3_RS10920 - glycerol-3-phosphate dehydrogenase, at 2,415,842 to 2,416,858
_RS10920
RALBFv3_RS10925: RALBFv3_RS10925 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 2,416,878 to 2,417,348
_RS10925
RALBFv3_RS10930: RALBFv3_RS10930 - amidophosphoribosyltransferase, at 2,417,448 to 2,418,170
_RS10930
Position (kb)
2415
2416
2417 Strain fitness (log2 ratio)
-1
0
1 at 2414.842 kb on + strand at 2414.842 kb on + strand at 2414.843 kb on - strand at 2414.843 kb on - strand at 2414.996 kb on - strand, within RALBFv3_RS10910 at 2414.996 kb on - strand, within RALBFv3_RS10910 at 2415.162 kb on + strand at 2415.162 kb on + strand at 2415.162 kb on + strand at 2415.163 kb on - strand at 2415.167 kb on + strand at 2415.206 kb on + strand at 2415.207 kb on - strand at 2415.752 kb on + strand at 2415.752 kb on + strand at 2415.753 kb on - strand at 2415.753 kb on - strand at 2416.199 kb on - strand, within RALBFv3_RS10920 at 2416.921 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 2,414,842 + +0.3 2,414,842 + -0.6 2,414,843 - -1.0 2,414,843 - +1.0 2,414,996 - RALBFv3_RS10910 0.67 +1.0 2,414,996 - RALBFv3_RS10910 0.67 +0.7 2,415,162 + -0.1 2,415,162 + -0.3 2,415,162 + -0.2 2,415,163 - +0.1 2,415,167 + -0.8 2,415,206 + -0.7 2,415,207 - -1.3 2,415,752 + +0.7 2,415,752 + +0.2 2,415,753 - -0.5 2,415,753 - -0.3 2,416,199 - RALBFv3_RS10920 0.35 +0.6 2,416,921 - -0.1
Or see this region's nucleotide sequence