Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS08590

Experiment: CPG

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS08585 and RALBFv3_RS08590 are separated by 83 nucleotidesRALBFv3_RS08590 and RALBFv3_RS08595 are separated by 104 nucleotides RALBFv3_RS08585: RALBFv3_RS08585 - 2-hydroxy-3-oxopropionate reductase, at 1,887,806 to 1,888,717 _RS08585 RALBFv3_RS08590: RALBFv3_RS08590 - glycerate kinase, at 1,888,801 to 1,890,105 _RS08590 RALBFv3_RS08595: RALBFv3_RS08595 - pyruvate kinase, at 1,890,210 to 1,891,646 _RS08595 Position (kb) 1888 1889 1890 1891Strain fitness (log2 ratio) -1 0 1at 1888.178 kb on + strand, within RALBFv3_RS08585at 1888.179 kb on - strand, within RALBFv3_RS08585at 1888.179 kb on - strand, within RALBFv3_RS08585at 1888.807 kb on - strandat 1889.042 kb on - strand, within RALBFv3_RS08590at 1889.489 kb on - strand, within RALBFv3_RS08590at 1889.489 kb on - strand, within RALBFv3_RS08590at 1889.489 kb on - strand, within RALBFv3_RS08590at 1889.489 kb on - strand, within RALBFv3_RS08590at 1889.502 kb on - strand, within RALBFv3_RS08590at 1890.922 kb on + strand, within RALBFv3_RS08595at 1890.922 kb on + strand, within RALBFv3_RS08595at 1890.923 kb on - strand, within RALBFv3_RS08595

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CPG
remove
1,888,178 + RALBFv3_RS08585 0.41 +0.0
1,888,179 - RALBFv3_RS08585 0.41 +0.1
1,888,179 - RALBFv3_RS08585 0.41 +0.0
1,888,807 - +1.3
1,889,042 - RALBFv3_RS08590 0.18 +0.6
1,889,489 - RALBFv3_RS08590 0.53 +0.1
1,889,489 - RALBFv3_RS08590 0.53 -0.4
1,889,489 - RALBFv3_RS08590 0.53 -0.6
1,889,489 - RALBFv3_RS08590 0.53 +1.7
1,889,502 - RALBFv3_RS08590 0.54 +0.4
1,890,922 + RALBFv3_RS08595 0.50 -0.7
1,890,922 + RALBFv3_RS08595 0.50 +0.4
1,890,923 - RALBFv3_RS08595 0.50 -1.3

Or see this region's nucleotide sequence