Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS08340 and RALBFv3_RS08345 overlap by 1 nucleotides RALBFv3_RS08345 and RALBFv3_RS08350 are separated by 7 nucleotides RALBFv3_RS08350 and RALBFv3_RS08355 overlap by 4 nucleotides RALBFv3_RS08355 and RALBFv3_RS08360 overlap by 4 nucleotides
RALBFv3_RS08340: RALBFv3_RS08340 - hypothetical protein, at 1,846,071 to 1,846,808
_RS08340
RALBFv3_RS08345: RALBFv3_RS08345 - hypothetical protein, at 1,846,808 to 1,847,284
_RS08345
RALBFv3_RS08350: RALBFv3_RS08350 - hypothetical protein, at 1,847,292 to 1,847,939
_RS08350
RALBFv3_RS08355: RALBFv3_RS08355 - phage related protein, at 1,847,936 to 1,848,808
_RS08355
RALBFv3_RS08360: RALBFv3_RS08360 - hypothetical protein, at 1,848,805 to 1,849,287
_RS08360
Position (kb) 1847
1848 Strain fitness (log2 ratio) -1
0
1
2 at 1846.309 kb on + strand, within RALBFv3_RS08340 at 1846.310 kb on - strand, within RALBFv3_RS08340 at 1846.310 kb on - strand, within RALBFv3_RS08340 at 1846.317 kb on + strand, within RALBFv3_RS08340 at 1846.318 kb on + strand, within RALBFv3_RS08340 at 1846.318 kb on + strand, within RALBFv3_RS08340 at 1846.318 kb on + strand, within RALBFv3_RS08340 at 1846.318 kb on + strand, within RALBFv3_RS08340 at 1846.319 kb on + strand, within RALBFv3_RS08340 at 1846.319 kb on - strand, within RALBFv3_RS08340 at 1846.339 kb on + strand, within RALBFv3_RS08340 at 1846.339 kb on + strand, within RALBFv3_RS08340 at 1846.339 kb on + strand, within RALBFv3_RS08340 at 1846.466 kb on + strand, within RALBFv3_RS08340 at 1846.466 kb on + strand, within RALBFv3_RS08340 at 1846.466 kb on + strand, within RALBFv3_RS08340 at 1846.466 kb on + strand, within RALBFv3_RS08340 at 1846.466 kb on + strand, within RALBFv3_RS08340 at 1846.467 kb on - strand, within RALBFv3_RS08340 at 1846.467 kb on - strand, within RALBFv3_RS08340 at 1846.467 kb on - strand, within RALBFv3_RS08340 at 1846.660 kb on + strand, within RALBFv3_RS08340 at 1846.660 kb on + strand, within RALBFv3_RS08340 at 1846.661 kb on - strand, within RALBFv3_RS08340 at 1846.661 kb on - strand, within RALBFv3_RS08340 at 1846.709 kb on - strand, within RALBFv3_RS08340 at 1846.948 kb on - strand, within RALBFv3_RS08345 at 1846.948 kb on - strand, within RALBFv3_RS08345 at 1847.145 kb on + strand, within RALBFv3_RS08345 at 1847.146 kb on - strand, within RALBFv3_RS08345 at 1847.431 kb on + strand, within RALBFv3_RS08350 at 1847.432 kb on - strand, within RALBFv3_RS08350 at 1847.744 kb on - strand, within RALBFv3_RS08350 at 1847.744 kb on - strand, within RALBFv3_RS08350 at 1847.744 kb on - strand, within RALBFv3_RS08350 at 1847.919 kb on + strand at 1847.920 kb on + strand at 1847.920 kb on + strand at 1847.920 kb on + strand at 1847.920 kb on + strand at 1847.921 kb on - strand at 1847.921 kb on - strand at 1847.933 kb on + strand at 1847.955 kb on + strand at 1847.991 kb on + strand at 1848.252 kb on + strand, within RALBFv3_RS08355 at 1848.252 kb on + strand, within RALBFv3_RS08355 at 1848.252 kb on + strand, within RALBFv3_RS08355 at 1848.357 kb on + strand, within RALBFv3_RS08355 at 1848.522 kb on + strand, within RALBFv3_RS08355 at 1848.909 kb on - strand, within RALBFv3_RS08360 at 1848.909 kb on - strand, within RALBFv3_RS08360
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 1,846,309 + RALBFv3_RS08340 0.32 -0.3 1,846,310 - RALBFv3_RS08340 0.32 -0.5 1,846,310 - RALBFv3_RS08340 0.32 -0.7 1,846,317 + RALBFv3_RS08340 0.33 -1.4 1,846,318 + RALBFv3_RS08340 0.33 +0.1 1,846,318 + RALBFv3_RS08340 0.33 -1.7 1,846,318 + RALBFv3_RS08340 0.33 +0.3 1,846,318 + RALBFv3_RS08340 0.33 -0.3 1,846,319 + RALBFv3_RS08340 0.34 +1.1 1,846,319 - RALBFv3_RS08340 0.34 -0.4 1,846,339 + RALBFv3_RS08340 0.36 -0.2 1,846,339 + RALBFv3_RS08340 0.36 -0.5 1,846,339 + RALBFv3_RS08340 0.36 +0.4 1,846,466 + RALBFv3_RS08340 0.54 +0.3 1,846,466 + RALBFv3_RS08340 0.54 +0.6 1,846,466 + RALBFv3_RS08340 0.54 -0.1 1,846,466 + RALBFv3_RS08340 0.54 +0.4 1,846,466 + RALBFv3_RS08340 0.54 -0.4 1,846,467 - RALBFv3_RS08340 0.54 -1.2 1,846,467 - RALBFv3_RS08340 0.54 -0.4 1,846,467 - RALBFv3_RS08340 0.54 +0.3 1,846,660 + RALBFv3_RS08340 0.80 +0.0 1,846,660 + RALBFv3_RS08340 0.80 -0.3 1,846,661 - RALBFv3_RS08340 0.80 -0.5 1,846,661 - RALBFv3_RS08340 0.80 -0.4 1,846,709 - RALBFv3_RS08340 0.86 +0.3 1,846,948 - RALBFv3_RS08345 0.29 -0.7 1,846,948 - RALBFv3_RS08345 0.29 +0.3 1,847,145 + RALBFv3_RS08345 0.71 +1.5 1,847,146 - RALBFv3_RS08345 0.71 -1.3 1,847,431 + RALBFv3_RS08350 0.21 +0.5 1,847,432 - RALBFv3_RS08350 0.22 +2.3 1,847,744 - RALBFv3_RS08350 0.70 +0.1 1,847,744 - RALBFv3_RS08350 0.70 +0.7 1,847,744 - RALBFv3_RS08350 0.70 -0.9 1,847,919 + -0.6 1,847,920 + +0.0 1,847,920 + -1.1 1,847,920 + -0.2 1,847,920 + +0.4 1,847,921 - +2.3 1,847,921 - -0.2 1,847,933 + -0.5 1,847,955 + +0.6 1,847,991 + -0.2 1,848,252 + RALBFv3_RS08355 0.36 -1.4 1,848,252 + RALBFv3_RS08355 0.36 +0.3 1,848,252 + RALBFv3_RS08355 0.36 +0.7 1,848,357 + RALBFv3_RS08355 0.48 -1.6 1,848,522 + RALBFv3_RS08355 0.67 -0.1 1,848,909 - RALBFv3_RS08360 0.22 -0.0 1,848,909 - RALBFv3_RS08360 0.22 +1.5
Or see this region's nucleotide sequence