Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS08260 and RALBFv3_RS08265 are separated by 13 nucleotides RALBFv3_RS08265 and RALBFv3_RS08270 are separated by 115 nucleotides RALBFv3_RS08270 and RALBFv3_RS08275 are separated by 126 nucleotides RALBFv3_RS08275 and RALBFv3_RS08280 are separated by 183 nucleotides
RALBFv3_RS08260: RALBFv3_RS08260 - hypothetical protein, at 1,835,308 to 1,835,844
_RS08260
RALBFv3_RS08265: RALBFv3_RS08265 - hypothetical protein, at 1,835,858 to 1,836,208
_RS08265
RALBFv3_RS08270: RALBFv3_RS08270 - DUF3489 domain-containing protein, at 1,836,324 to 1,836,797
_RS08270
RALBFv3_RS08275: RALBFv3_RS08275 - hypothetical protein, at 1,836,924 to 1,837,274
_RS08275
RALBFv3_RS08280: RALBFv3_RS08280 - hypothetical protein, at 1,837,458 to 1,837,826
_RS08280
Position (kb) 1836
1837 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1835.560 kb on + strand, within RALBFv3_RS08260 at 1835.560 kb on + strand, within RALBFv3_RS08260 at 1835.560 kb on + strand, within RALBFv3_RS08260 at 1835.560 kb on + strand, within RALBFv3_RS08260 at 1835.976 kb on + strand, within RALBFv3_RS08265 at 1835.977 kb on - strand, within RALBFv3_RS08265 at 1836.075 kb on - strand, within RALBFv3_RS08265 at 1836.075 kb on - strand, within RALBFv3_RS08265 at 1836.514 kb on - strand, within RALBFv3_RS08270 at 1837.056 kb on + strand, within RALBFv3_RS08275 at 1837.056 kb on + strand, within RALBFv3_RS08275 at 1837.069 kb on - strand, within RALBFv3_RS08275 at 1837.069 kb on - strand, within RALBFv3_RS08275 at 1837.179 kb on + strand, within RALBFv3_RS08275 at 1837.180 kb on - strand, within RALBFv3_RS08275 at 1837.180 kb on - strand, within RALBFv3_RS08275 at 1837.221 kb on + strand, within RALBFv3_RS08275 at 1837.221 kb on + strand, within RALBFv3_RS08275 at 1837.221 kb on + strand, within RALBFv3_RS08275 at 1837.221 kb on + strand, within RALBFv3_RS08275 at 1837.221 kb on + strand, within RALBFv3_RS08275 at 1837.222 kb on - strand, within RALBFv3_RS08275 at 1837.222 kb on - strand, within RALBFv3_RS08275 at 1837.222 kb on - strand, within RALBFv3_RS08275 at 1837.222 kb on - strand, within RALBFv3_RS08275 at 1837.222 kb on - strand, within RALBFv3_RS08275 at 1837.239 kb on - strand, within RALBFv3_RS08275 at 1837.239 kb on - strand, within RALBFv3_RS08275 at 1837.245 kb on + strand at 1837.460 kb on - strand at 1837.520 kb on - strand, within RALBFv3_RS08280 at 1837.520 kb on - strand, within RALBFv3_RS08280 at 1837.543 kb on + strand, within RALBFv3_RS08280 at 1837.543 kb on + strand, within RALBFv3_RS08280 at 1837.544 kb on - strand, within RALBFv3_RS08280 at 1837.544 kb on - strand, within RALBFv3_RS08280 at 1837.544 kb on - strand, within RALBFv3_RS08280 at 1837.757 kb on + strand, within RALBFv3_RS08280 at 1837.759 kb on + strand, within RALBFv3_RS08280
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 1,835,560 + RALBFv3_RS08260 0.47 +0.0 1,835,560 + RALBFv3_RS08260 0.47 +0.6 1,835,560 + RALBFv3_RS08260 0.47 -0.5 1,835,560 + RALBFv3_RS08260 0.47 +1.9 1,835,976 + RALBFv3_RS08265 0.34 +0.5 1,835,977 - RALBFv3_RS08265 0.34 -0.1 1,836,075 - RALBFv3_RS08265 0.62 +0.9 1,836,075 - RALBFv3_RS08265 0.62 -2.3 1,836,514 - RALBFv3_RS08270 0.40 +0.7 1,837,056 + RALBFv3_RS08275 0.38 -0.4 1,837,056 + RALBFv3_RS08275 0.38 -0.3 1,837,069 - RALBFv3_RS08275 0.41 +0.0 1,837,069 - RALBFv3_RS08275 0.41 +0.7 1,837,179 + RALBFv3_RS08275 0.73 -0.1 1,837,180 - RALBFv3_RS08275 0.73 +0.2 1,837,180 - RALBFv3_RS08275 0.73 +0.0 1,837,221 + RALBFv3_RS08275 0.85 -0.9 1,837,221 + RALBFv3_RS08275 0.85 -1.5 1,837,221 + RALBFv3_RS08275 0.85 -0.2 1,837,221 + RALBFv3_RS08275 0.85 -0.6 1,837,221 + RALBFv3_RS08275 0.85 +0.6 1,837,222 - RALBFv3_RS08275 0.85 +1.0 1,837,222 - RALBFv3_RS08275 0.85 -0.0 1,837,222 - RALBFv3_RS08275 0.85 -0.2 1,837,222 - RALBFv3_RS08275 0.85 -1.8 1,837,222 - RALBFv3_RS08275 0.85 -0.3 1,837,239 - RALBFv3_RS08275 0.90 -0.1 1,837,239 - RALBFv3_RS08275 0.90 +0.4 1,837,245 + +0.1 1,837,460 - -0.8 1,837,520 - RALBFv3_RS08280 0.17 +0.3 1,837,520 - RALBFv3_RS08280 0.17 +0.3 1,837,543 + RALBFv3_RS08280 0.23 +0.9 1,837,543 + RALBFv3_RS08280 0.23 -0.5 1,837,544 - RALBFv3_RS08280 0.23 -0.3 1,837,544 - RALBFv3_RS08280 0.23 -0.7 1,837,544 - RALBFv3_RS08280 0.23 -0.6 1,837,757 + RALBFv3_RS08280 0.81 +0.1 1,837,759 + RALBFv3_RS08280 0.82 +0.0
Or see this region's nucleotide sequence