Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS07920

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS07910 and RALBFv3_RS07915 overlap by 1 nucleotidesRALBFv3_RS07915 and RALBFv3_RS07920 are separated by 147 nucleotidesRALBFv3_RS07920 and RALBFv3_RS07925 are separated by 89 nucleotides RALBFv3_RS07910: RALBFv3_RS07910 - amino acid-binding protein, at 1,744,355 to 1,745,518 _RS07910 RALBFv3_RS07915: RALBFv3_RS07915 - hypothetical protein, at 1,745,518 to 1,745,916 _RS07915 RALBFv3_RS07920: RALBFv3_RS07920 - XRE family transcriptional regulator, at 1,746,064 to 1,746,405 _RS07920 RALBFv3_RS07925: RALBFv3_RS07925 - cytochrome c, at 1,746,495 to 1,747,358 _RS07925 Position (kb) 1746 1747Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1745.085 kb on + strand, within RALBFv3_RS07910at 1745.085 kb on + strand, within RALBFv3_RS07910at 1745.085 kb on + strand, within RALBFv3_RS07910at 1745.085 kb on + strand, within RALBFv3_RS07910at 1745.085 kb on + strand, within RALBFv3_RS07910at 1745.085 kb on + strand, within RALBFv3_RS07910at 1745.085 kb on + strand, within RALBFv3_RS07910at 1745.085 kb on + strand, within RALBFv3_RS07910at 1745.085 kb on + strand, within RALBFv3_RS07910at 1745.085 kb on + strand, within RALBFv3_RS07910at 1745.086 kb on - strand, within RALBFv3_RS07910at 1745.086 kb on - strand, within RALBFv3_RS07910at 1745.086 kb on - strand, within RALBFv3_RS07910at 1745.086 kb on - strand, within RALBFv3_RS07910at 1745.086 kb on - strand, within RALBFv3_RS07910at 1745.086 kb on - strand, within RALBFv3_RS07910at 1745.358 kb on + strand, within RALBFv3_RS07910at 1745.358 kb on + strand, within RALBFv3_RS07910at 1745.359 kb on - strand, within RALBFv3_RS07910at 1745.359 kb on - strand, within RALBFv3_RS07910at 1745.359 kb on - strand, within RALBFv3_RS07910at 1745.359 kb on - strand, within RALBFv3_RS07910at 1745.359 kb on - strand, within RALBFv3_RS07910at 1745.359 kb on - strand, within RALBFv3_RS07910at 1745.857 kb on + strand, within RALBFv3_RS07915at 1745.932 kb on - strandat 1745.932 kb on - strandat 1745.961 kb on - strandat 1746.032 kb on - strandat 1746.144 kb on + strand, within RALBFv3_RS07920at 1746.144 kb on + strand, within RALBFv3_RS07920at 1746.145 kb on - strand, within RALBFv3_RS07920at 1746.145 kb on - strand, within RALBFv3_RS07920at 1746.145 kb on - strand, within RALBFv3_RS07920at 1746.217 kb on + strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.218 kb on - strand, within RALBFv3_RS07920at 1746.280 kb on + strand, within RALBFv3_RS07920at 1746.281 kb on - strand, within RALBFv3_RS07920at 1746.281 kb on - strand, within RALBFv3_RS07920at 1746.477 kb on + strandat 1746.478 kb on - strandat 1746.547 kb on + strandat 1746.547 kb on + strandat 1746.547 kb on + strandat 1746.548 kb on - strandat 1746.548 kb on - strandat 1746.676 kb on + strand, within RALBFv3_RS07925at 1746.677 kb on - strand, within RALBFv3_RS07925at 1746.677 kb on - strand, within RALBFv3_RS07925at 1746.677 kb on - strand, within RALBFv3_RS07925at 1746.677 kb on - strand, within RALBFv3_RS07925at 1746.691 kb on + strand, within RALBFv3_RS07925at 1746.691 kb on + strand, within RALBFv3_RS07925at 1746.692 kb on - strand, within RALBFv3_RS07925at 1746.692 kb on - strand, within RALBFv3_RS07925at 1746.692 kb on - strand, within RALBFv3_RS07925at 1746.880 kb on + strand, within RALBFv3_RS07925at 1746.880 kb on + strand, within RALBFv3_RS07925at 1746.880 kb on + strand, within RALBFv3_RS07925at 1746.880 kb on + strand, within RALBFv3_RS07925at 1746.880 kb on + strand, within RALBFv3_RS07925at 1746.880 kb on + strand, within RALBFv3_RS07925at 1746.880 kb on + strand, within RALBFv3_RS07925at 1746.881 kb on - strand, within RALBFv3_RS07925at 1746.881 kb on - strand, within RALBFv3_RS07925at 1746.881 kb on - strand, within RALBFv3_RS07925at 1746.881 kb on - strand, within RALBFv3_RS07925at 1747.069 kb on + strand, within RALBFv3_RS07925at 1747.069 kb on + strand, within RALBFv3_RS07925at 1747.069 kb on + strand, within RALBFv3_RS07925at 1747.070 kb on - strand, within RALBFv3_RS07925at 1747.070 kb on - strand, within RALBFv3_RS07925at 1747.070 kb on - strand, within RALBFv3_RS07925at 1747.070 kb on - strand, within RALBFv3_RS07925at 1747.358 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,745,085 + RALBFv3_RS07910 0.63 +1.9
1,745,085 + RALBFv3_RS07910 0.63 -0.3
1,745,085 + RALBFv3_RS07910 0.63 -1.0
1,745,085 + RALBFv3_RS07910 0.63 -1.0
1,745,085 + RALBFv3_RS07910 0.63 -0.5
1,745,085 + RALBFv3_RS07910 0.63 +0.3
1,745,085 + RALBFv3_RS07910 0.63 -1.0
1,745,085 + RALBFv3_RS07910 0.63 -0.0
1,745,085 + RALBFv3_RS07910 0.63 +0.0
1,745,085 + RALBFv3_RS07910 0.63 +0.1
1,745,086 - RALBFv3_RS07910 0.63 -0.3
1,745,086 - RALBFv3_RS07910 0.63 -0.2
1,745,086 - RALBFv3_RS07910 0.63 -0.0
1,745,086 - RALBFv3_RS07910 0.63 -0.1
1,745,086 - RALBFv3_RS07910 0.63 -0.8
1,745,086 - RALBFv3_RS07910 0.63 -1.0
1,745,358 + RALBFv3_RS07910 0.86 +0.3
1,745,358 + RALBFv3_RS07910 0.86 -0.1
1,745,359 - RALBFv3_RS07910 0.86 -2.5
1,745,359 - RALBFv3_RS07910 0.86 +0.3
1,745,359 - RALBFv3_RS07910 0.86 -1.0
1,745,359 - RALBFv3_RS07910 0.86 -0.5
1,745,359 - RALBFv3_RS07910 0.86 -0.7
1,745,359 - RALBFv3_RS07910 0.86 -0.2
1,745,857 + RALBFv3_RS07915 0.85 +2.3
1,745,932 - +0.7
1,745,932 - +0.2
1,745,961 - +0.2
1,746,032 - +3.6
1,746,144 + RALBFv3_RS07920 0.23 +0.0
1,746,144 + RALBFv3_RS07920 0.23 -0.7
1,746,145 - RALBFv3_RS07920 0.24 -0.2
1,746,145 - RALBFv3_RS07920 0.24 -0.7
1,746,145 - RALBFv3_RS07920 0.24 +2.8
1,746,217 + RALBFv3_RS07920 0.45 -0.3
1,746,218 - RALBFv3_RS07920 0.45 +2.9
1,746,218 - RALBFv3_RS07920 0.45 +2.8
1,746,218 - RALBFv3_RS07920 0.45 +0.1
1,746,218 - RALBFv3_RS07920 0.45 -1.0
1,746,218 - RALBFv3_RS07920 0.45 +0.0
1,746,218 - RALBFv3_RS07920 0.45 -0.1
1,746,218 - RALBFv3_RS07920 0.45 +0.9
1,746,218 - RALBFv3_RS07920 0.45 -0.1
1,746,218 - RALBFv3_RS07920 0.45 +0.3
1,746,218 - RALBFv3_RS07920 0.45 +2.9
1,746,218 - RALBFv3_RS07920 0.45 -0.0
1,746,218 - RALBFv3_RS07920 0.45 -0.3
1,746,218 - RALBFv3_RS07920 0.45 -1.1
1,746,218 - RALBFv3_RS07920 0.45 +0.1
1,746,218 - RALBFv3_RS07920 0.45 -0.4
1,746,280 + RALBFv3_RS07920 0.63 -0.4
1,746,281 - RALBFv3_RS07920 0.63 -0.5
1,746,281 - RALBFv3_RS07920 0.63 -0.5
1,746,477 + +1.3
1,746,478 - -0.0
1,746,547 + +0.9
1,746,547 + -1.3
1,746,547 + +1.4
1,746,548 - +2.8
1,746,548 - +2.9
1,746,676 + RALBFv3_RS07925 0.21 +1.3
1,746,677 - RALBFv3_RS07925 0.21 -0.4
1,746,677 - RALBFv3_RS07925 0.21 +2.9
1,746,677 - RALBFv3_RS07925 0.21 +2.9
1,746,677 - RALBFv3_RS07925 0.21 +0.1
1,746,691 + RALBFv3_RS07925 0.23 +1.0
1,746,691 + RALBFv3_RS07925 0.23 -0.1
1,746,692 - RALBFv3_RS07925 0.23 -0.7
1,746,692 - RALBFv3_RS07925 0.23 +2.9
1,746,692 - RALBFv3_RS07925 0.23 +2.6
1,746,880 + RALBFv3_RS07925 0.45 +0.0
1,746,880 + RALBFv3_RS07925 0.45 +0.0
1,746,880 + RALBFv3_RS07925 0.45 -0.2
1,746,880 + RALBFv3_RS07925 0.45 +0.3
1,746,880 + RALBFv3_RS07925 0.45 -0.5
1,746,880 + RALBFv3_RS07925 0.45 +0.4
1,746,880 + RALBFv3_RS07925 0.45 +0.2
1,746,881 - RALBFv3_RS07925 0.45 +3.2
1,746,881 - RALBFv3_RS07925 0.45 -0.6
1,746,881 - RALBFv3_RS07925 0.45 +3.5
1,746,881 - RALBFv3_RS07925 0.45 -0.2
1,747,069 + RALBFv3_RS07925 0.66 -0.6
1,747,069 + RALBFv3_RS07925 0.66 -0.3
1,747,069 + RALBFv3_RS07925 0.66 -0.6
1,747,070 - RALBFv3_RS07925 0.67 +2.8
1,747,070 - RALBFv3_RS07925 0.67 +0.8
1,747,070 - RALBFv3_RS07925 0.67 -0.7
1,747,070 - RALBFv3_RS07925 0.67 +0.6
1,747,358 + -0.4

Or see this region's nucleotide sequence