Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06940

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS06935 and RALBFv3_RS06940 overlap by 4 nucleotidesRALBFv3_RS06940 and RALBFv3_RS06945 are separated by 173 nucleotides RALBFv3_RS06935: RALBFv3_RS06935 - 3-dehydroquinate synthase, at 1,539,335 to 1,540,441 _RS06935 RALBFv3_RS06940: RALBFv3_RS06940 - shikimate kinase, at 1,540,438 to 1,540,977 _RS06940 RALBFv3_RS06945: RALBFv3_RS06945 - type IV pilus secretin PilQ, at 1,541,151 to 1,543,292 _RS06945 Position (kb) 1540 1541Strain fitness (log2 ratio) -2 -1 0 1 2at 1540.525 kb on - strand, within RALBFv3_RS06940at 1540.525 kb on - strand, within RALBFv3_RS06940at 1540.528 kb on - strand, within RALBFv3_RS06940at 1541.044 kb on + strandat 1541.152 kb on + strandat 1541.311 kb on + strandat 1541.528 kb on + strand, within RALBFv3_RS06945at 1541.528 kb on + strand, within RALBFv3_RS06945at 1541.865 kb on - strand, within RALBFv3_RS06945

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,540,525 - RALBFv3_RS06940 0.16 -1.7
1,540,525 - RALBFv3_RS06940 0.16 -1.3
1,540,528 - RALBFv3_RS06940 0.17 -2.3
1,541,044 + -0.2
1,541,152 + +0.3
1,541,311 + +0.2
1,541,528 + RALBFv3_RS06945 0.18 +0.4
1,541,528 + RALBFv3_RS06945 0.18 +0.1
1,541,865 - RALBFv3_RS06945 0.33 +2.3

Or see this region's nucleotide sequence