Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06865

Experiment: CPG

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRALBFv3_RS06855 and RALBFv3_RS06860 are separated by 91 nucleotidesRALBFv3_RS06860 and RALBFv3_RS06865 are separated by 57 nucleotidesRALBFv3_RS06865 and RALBFv3_RS06870 overlap by 4 nucleotides RALBFv3_RS06855: RALBFv3_RS06855 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,520,520 to 1,521,785 _RS06855 RALBFv3_RS06860: RALBFv3_RS06860 - BolA family transcriptional regulator, at 1,521,877 to 1,522,113 _RS06860 RALBFv3_RS06865: RALBFv3_RS06865 - ABC transporter permease, at 1,522,171 to 1,522,959 _RS06865 RALBFv3_RS06870: RALBFv3_RS06870 - ABC transporter ATP-binding protein, at 1,522,956 to 1,523,912 _RS06870 Position (kb) 1522 1523Strain fitness (log2 ratio) -1 0 1at 1522.188 kb on - strandat 1522.317 kb on - strand, within RALBFv3_RS06865at 1522.317 kb on - strand, within RALBFv3_RS06865at 1522.902 kb on - strandat 1522.902 kb on - strandat 1523.921 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction CPG
remove
1,522,188 - -0.4
1,522,317 - RALBFv3_RS06865 0.19 +1.6
1,522,317 - RALBFv3_RS06865 0.19 +0.3
1,522,902 - -1.0
1,522,902 - -0.1
1,523,921 - -1.3

Or see this region's nucleotide sequence