Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06245

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS06240 and RALBFv3_RS06245 are separated by 241 nucleotidesRALBFv3_RS06245 and RALBFv3_RS06250 are separated by 338 nucleotides RALBFv3_RS06240: RALBFv3_RS06240 - UDP-3-O-acyl-N-acetylglucosamine deacetylase, at 1,386,795 to 1,387,712 _RS06240 RALBFv3_RS06245: RALBFv3_RS06245 - peroxiredoxin, at 1,387,954 to 1,388,454 _RS06245 RALBFv3_RS06250: RALBFv3_RS06250 - cell division protein FtsZ, at 1,388,793 to 1,389,995 _RS06250 Position (kb) 1387 1388 1389Strain fitness (log2 ratio) -1 0 1at 1387.823 kb on - strandat 1387.833 kb on + strandat 1387.833 kb on + strandat 1387.833 kb on + strandat 1387.834 kb on - strandat 1387.898 kb on + strandat 1388.268 kb on - strand, within RALBFv3_RS06245at 1388.414 kb on + strandat 1388.492 kb on - strandat 1388.492 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,387,823 - -0.3
1,387,833 + +0.0
1,387,833 + +1.0
1,387,833 + +0.2
1,387,834 - +1.3
1,387,898 + -0.0
1,388,268 - RALBFv3_RS06245 0.63 +0.4
1,388,414 + +1.1
1,388,492 - -0.5
1,388,492 - +0.3

Or see this region's nucleotide sequence