Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS06185 and RALBFv3_RS06190 are separated by 2 nucleotides RALBFv3_RS06190 and RALBFv3_RS06195 are separated by 12 nucleotides RALBFv3_RS06195 and RALBFv3_RS06200 are separated by 117 nucleotides
RALBFv3_RS06185: RALBFv3_RS06185 - type II secretion system F family protein, at 1,375,618 to 1,376,883
_RS06185
RALBFv3_RS06190: RALBFv3_RS06190 - prepilin peptidase, at 1,376,886 to 1,377,767
_RS06190
RALBFv3_RS06195: RALBFv3_RS06195 - dephospho-CoA kinase, at 1,377,780 to 1,378,394
_RS06195
RALBFv3_RS06200: RALBFv3_RS06200 - cell division protein ZapD, at 1,378,512 to 1,379,270
_RS06200
Position (kb) 1376
1377
1378 Strain fitness (log2 ratio) -1
0
1
2
3 at 1376.341 kb on + strand, within RALBFv3_RS06185 at 1376.341 kb on + strand, within RALBFv3_RS06185 at 1376.380 kb on + strand, within RALBFv3_RS06185 at 1376.578 kb on + strand, within RALBFv3_RS06185 at 1376.578 kb on + strand, within RALBFv3_RS06185 at 1376.578 kb on + strand, within RALBFv3_RS06185 at 1376.578 kb on + strand, within RALBFv3_RS06185 at 1376.743 kb on + strand, within RALBFv3_RS06185 at 1376.743 kb on + strand, within RALBFv3_RS06185 at 1376.848 kb on + strand at 1376.849 kb on - strand at 1377.483 kb on + strand, within RALBFv3_RS06190 at 1377.492 kb on + strand, within RALBFv3_RS06190 at 1378.453 kb on - strand at 1378.453 kb on - strand at 1378.453 kb on - strand at 1378.487 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 1,376,341 + RALBFv3_RS06185 0.57 +0.6 1,376,341 + RALBFv3_RS06185 0.57 +3.1 1,376,380 + RALBFv3_RS06185 0.60 +0.5 1,376,578 + RALBFv3_RS06185 0.76 -0.3 1,376,578 + RALBFv3_RS06185 0.76 +0.4 1,376,578 + RALBFv3_RS06185 0.76 +1.2 1,376,578 + RALBFv3_RS06185 0.76 -0.4 1,376,743 + RALBFv3_RS06185 0.89 +0.9 1,376,743 + RALBFv3_RS06185 0.89 +0.6 1,376,848 + +1.1 1,376,849 - +0.7 1,377,483 + RALBFv3_RS06190 0.68 +1.4 1,377,492 + RALBFv3_RS06190 0.69 +0.3 1,378,453 - -0.8 1,378,453 - -0.3 1,378,453 - -0.1 1,378,487 + +0.2
Or see this region's nucleotide sequence