Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS06180 and RALBFv3_RS06185 are separated by 44 nucleotides RALBFv3_RS06185 and RALBFv3_RS06190 are separated by 2 nucleotides RALBFv3_RS06190 and RALBFv3_RS06195 are separated by 12 nucleotides
RALBFv3_RS06180: RALBFv3_RS06180 - type IV-A pilus assembly ATPase PilB, at 1,373,846 to 1,375,573
_RS06180
RALBFv3_RS06185: RALBFv3_RS06185 - type II secretion system F family protein, at 1,375,618 to 1,376,883
_RS06185
RALBFv3_RS06190: RALBFv3_RS06190 - prepilin peptidase, at 1,376,886 to 1,377,767
_RS06190
RALBFv3_RS06195: RALBFv3_RS06195 - dephospho-CoA kinase, at 1,377,780 to 1,378,394
_RS06195
Position (kb) 1375
1376
1377 Strain fitness (log2 ratio) -1
0
1
2
3 at 1374.773 kb on + strand, within RALBFv3_RS06180 at 1375.373 kb on + strand, within RALBFv3_RS06180 at 1375.374 kb on - strand, within RALBFv3_RS06180 at 1375.395 kb on - strand, within RALBFv3_RS06180 at 1375.395 kb on - strand, within RALBFv3_RS06180 at 1375.873 kb on + strand, within RALBFv3_RS06185 at 1376.341 kb on + strand, within RALBFv3_RS06185 at 1376.341 kb on + strand, within RALBFv3_RS06185 at 1376.380 kb on + strand, within RALBFv3_RS06185 at 1376.578 kb on + strand, within RALBFv3_RS06185 at 1376.578 kb on + strand, within RALBFv3_RS06185 at 1376.578 kb on + strand, within RALBFv3_RS06185 at 1376.578 kb on + strand, within RALBFv3_RS06185 at 1376.743 kb on + strand, within RALBFv3_RS06185 at 1376.743 kb on + strand, within RALBFv3_RS06185 at 1376.848 kb on + strand at 1376.849 kb on - strand at 1377.483 kb on + strand, within RALBFv3_RS06190 at 1377.492 kb on + strand, within RALBFv3_RS06190
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 1,374,773 + RALBFv3_RS06180 0.54 +0.7 1,375,373 + RALBFv3_RS06180 0.88 +1.0 1,375,374 - RALBFv3_RS06180 0.88 -0.1 1,375,395 - RALBFv3_RS06180 0.90 -0.9 1,375,395 - RALBFv3_RS06180 0.90 +0.3 1,375,873 + RALBFv3_RS06185 0.20 +1.7 1,376,341 + RALBFv3_RS06185 0.57 +0.6 1,376,341 + RALBFv3_RS06185 0.57 +3.1 1,376,380 + RALBFv3_RS06185 0.60 +0.5 1,376,578 + RALBFv3_RS06185 0.76 -0.3 1,376,578 + RALBFv3_RS06185 0.76 +0.4 1,376,578 + RALBFv3_RS06185 0.76 +1.2 1,376,578 + RALBFv3_RS06185 0.76 -0.4 1,376,743 + RALBFv3_RS06185 0.89 +0.9 1,376,743 + RALBFv3_RS06185 0.89 +0.6 1,376,848 + +1.1 1,376,849 - +0.7 1,377,483 + RALBFv3_RS06190 0.68 +1.4 1,377,492 + RALBFv3_RS06190 0.69 +0.3
Or see this region's nucleotide sequence