Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS06030

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS06030 and RALBFv3_RS06035 are separated by 144 nucleotides RALBFv3_RS06030: RALBFv3_RS06030 - hemagglutinin, at 1,340,895 to 1,341,671 _RS06030 RALBFv3_RS06035: RALBFv3_RS06035 - hemagglutinin, at 1,341,816 to 1,342,898 _RS06035 Position (kb) 1340 1341 1342Strain fitness (log2 ratio) -2 -1 0 1at 1340.551 kb on - strandat 1340.564 kb on + strandat 1340.565 kb on - strandat 1341.445 kb on + strand, within RALBFv3_RS06030at 1341.560 kb on + strand, within RALBFv3_RS06030at 1341.779 kb on + strandat 1341.799 kb on + strandat 1341.799 kb on + strandat 1341.801 kb on - strandat 1342.442 kb on + strand, within RALBFv3_RS06035at 1342.442 kb on + strand, within RALBFv3_RS06035at 1342.443 kb on - strand, within RALBFv3_RS06035

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,340,551 - -1.9
1,340,564 + -0.7
1,340,565 - -1.3
1,341,445 + RALBFv3_RS06030 0.71 +0.3
1,341,560 + RALBFv3_RS06030 0.86 +0.7
1,341,779 + +0.2
1,341,799 + -0.5
1,341,799 + -1.9
1,341,801 - -2.0
1,342,442 + RALBFv3_RS06035 0.58 -1.0
1,342,442 + RALBFv3_RS06035 0.58 +0.2
1,342,443 - RALBFv3_RS06035 0.58 -0.8

Or see this region's nucleotide sequence