Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS05885 and RALBFv3_RS05890 are separated by 87 nucleotides RALBFv3_RS05890 and RALBFv3_RS05895 overlap by 4 nucleotides RALBFv3_RS05895 and RALBFv3_RS05900 are separated by 467 nucleotides
RALBFv3_RS05885: RALBFv3_RS05885 - DUF937 domain-containing protein, at 1,310,797 to 1,311,366
_RS05885
RALBFv3_RS05890: RALBFv3_RS05890 - hypothetical protein, at 1,311,454 to 1,312,059
_RS05890
RALBFv3_RS05895: RALBFv3_RS05895 - ribonuclease N1, at 1,312,056 to 1,312,487
_RS05895
RALBFv3_RS05900: RALBFv3_RS05900 - NADP-dependent malic enzyme, at 1,312,955 to 1,315,300
_RS05900
Position (kb) 1312
1313 Strain fitness (log2 ratio) -1
0
1 at 1312.100 kb on - strand, within RALBFv3_RS05895 at 1312.103 kb on - strand, within RALBFv3_RS05895 at 1312.196 kb on - strand, within RALBFv3_RS05895 at 1312.262 kb on - strand, within RALBFv3_RS05895 at 1312.449 kb on + strand at 1312.735 kb on - strand at 1312.754 kb on - strand at 1312.835 kb on - strand at 1312.875 kb on - strand at 1312.880 kb on + strand at 1313.118 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 1,312,100 - RALBFv3_RS05895 0.10 +0.6 1,312,103 - RALBFv3_RS05895 0.11 +0.5 1,312,196 - RALBFv3_RS05895 0.32 -0.5 1,312,262 - RALBFv3_RS05895 0.48 +0.6 1,312,449 + -0.3 1,312,735 - +0.7 1,312,754 - -0.5 1,312,835 - +0.3 1,312,875 - +1.7 1,312,880 + -0.1 1,313,118 + +0.3
Or see this region's nucleotide sequence