Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS05300

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS05290 and RALBFv3_RS05295 are separated by 132 nucleotidesRALBFv3_RS05295 and RALBFv3_RS05300 are separated by 11 nucleotidesRALBFv3_RS05300 and RALBFv3_RS05305 overlap by 1 nucleotidesRALBFv3_RS05305 and RALBFv3_RS05310 are separated by 32 nucleotides RALBFv3_RS05290: RALBFv3_RS05290 - DnaA regulatory inactivator Hda, at 1,169,001 to 1,169,702 _RS05290 RALBFv3_RS05295: RALBFv3_RS05295 - HAD-IB family hydrolase, at 1,169,835 to 1,170,509 _RS05295 RALBFv3_RS05300: RALBFv3_RS05300 - polynucleotide adenylyltransferase PcnB, at 1,170,521 to 1,172,071 _RS05300 RALBFv3_RS05305: RALBFv3_RS05305 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 1,172,071 to 1,172,580 _RS05305 RALBFv3_RS05310: RALBFv3_RS05310 - deoxynucleoside kinase, at 1,172,613 to 1,173,257 _RS05310 Position (kb) 1170 1171 1172 1173Strain fitness (log2 ratio) -2 -1 0 1at 1170.765 kb on - strand, within RALBFv3_RS05300at 1170.926 kb on + strand, within RALBFv3_RS05300at 1170.926 kb on + strand, within RALBFv3_RS05300at 1170.926 kb on + strand, within RALBFv3_RS05300at 1170.926 kb on + strand, within RALBFv3_RS05300at 1170.927 kb on - strand, within RALBFv3_RS05300at 1171.145 kb on + strand, within RALBFv3_RS05300at 1171.146 kb on - strand, within RALBFv3_RS05300at 1171.146 kb on - strand, within RALBFv3_RS05300at 1171.148 kb on + strand, within RALBFv3_RS05300at 1171.148 kb on + strand, within RALBFv3_RS05300at 1171.148 kb on + strand, within RALBFv3_RS05300at 1171.149 kb on - strand, within RALBFv3_RS05300at 1171.149 kb on - strand, within RALBFv3_RS05300at 1171.178 kb on + strand, within RALBFv3_RS05300at 1171.178 kb on + strand, within RALBFv3_RS05300at 1172.083 kb on + strandat 1172.083 kb on + strandat 1172.083 kb on + strandat 1172.757 kb on + strand, within RALBFv3_RS05310at 1172.758 kb on - strand, within RALBFv3_RS05310at 1172.939 kb on - strand, within RALBFv3_RS05310

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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1,170,765 - RALBFv3_RS05300 0.16 +1.4
1,170,926 + RALBFv3_RS05300 0.26 +0.8
1,170,926 + RALBFv3_RS05300 0.26 +0.4
1,170,926 + RALBFv3_RS05300 0.26 +1.3
1,170,926 + RALBFv3_RS05300 0.26 +1.3
1,170,927 - RALBFv3_RS05300 0.26 +1.6
1,171,145 + RALBFv3_RS05300 0.40 +1.2
1,171,146 - RALBFv3_RS05300 0.40 +1.2
1,171,146 - RALBFv3_RS05300 0.40 +1.7
1,171,148 + RALBFv3_RS05300 0.40 +1.1
1,171,148 + RALBFv3_RS05300 0.40 +0.4
1,171,148 + RALBFv3_RS05300 0.40 +0.9
1,171,149 - RALBFv3_RS05300 0.40 +1.4
1,171,149 - RALBFv3_RS05300 0.40 +1.7
1,171,178 + RALBFv3_RS05300 0.42 +1.4
1,171,178 + RALBFv3_RS05300 0.42 +0.2
1,172,083 + +1.2
1,172,083 + +0.6
1,172,083 + +0.1
1,172,757 + RALBFv3_RS05310 0.22 -1.8
1,172,758 - RALBFv3_RS05310 0.22 +0.2
1,172,939 - RALBFv3_RS05310 0.51 -0.4

Or see this region's nucleotide sequence