Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS04395 and RALBFv3_RS04400 are separated by 207 nucleotides RALBFv3_RS04400 and RALBFv3_RS04405 are separated by 301 nucleotides
RALBFv3_RS04395: RALBFv3_RS04395 - iron-sulfur cluster carrier protein ApbC, at 986,108 to 987,196
_RS04395
RALBFv3_RS04400: RALBFv3_RS04400 - OmpA family protein, at 987,404 to 988,033
_RS04400
RALBFv3_RS04405: RALBFv3_RS04405 - methionine--tRNA ligase, at 988,335 to 990,401
_RS04405
Position (kb) 987
988
989 Strain fitness (log2 ratio) -1
0
1
2 at 987.281 kb on + strand at 987.281 kb on + strand at 987.281 kb on + strand at 987.281 kb on + strand at 987.282 kb on - strand at 987.282 kb on - strand at 987.282 kb on - strand at 987.282 kb on - strand at 987.282 kb on - strand at 987.282 kb on - strand at 987.285 kb on + strand at 987.296 kb on + strand at 987.296 kb on + strand at 987.301 kb on + strand at 987.301 kb on + strand at 987.301 kb on + strand at 987.339 kb on - strand at 987.418 kb on + strand at 987.419 kb on - strand at 987.419 kb on - strand at 987.419 kb on - strand at 987.419 kb on - strand at 987.419 kb on - strand at 987.599 kb on + strand, within RALBFv3_RS04400 at 987.845 kb on + strand, within RALBFv3_RS04400 at 987.846 kb on - strand, within RALBFv3_RS04400 at 988.011 kb on - strand at 988.064 kb on + strand at 988.064 kb on + strand at 988.065 kb on - strand at 988.065 kb on - strand at 988.065 kb on - strand at 988.065 kb on - strand at 988.258 kb on + strand at 988.258 kb on + strand at 988.263 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 987,281 + +0.5 987,281 + +0.5 987,281 + -0.3 987,281 + -0.0 987,282 - +0.5 987,282 - -0.4 987,282 - +0.1 987,282 - +0.4 987,282 - +0.7 987,282 - +0.5 987,285 + -0.4 987,296 + +0.0 987,296 + -0.4 987,301 + -0.1 987,301 + +0.1 987,301 + +0.3 987,339 - +0.1 987,418 + +0.6 987,419 - +0.1 987,419 - +0.5 987,419 - +0.0 987,419 - +1.6 987,419 - +0.7 987,599 + RALBFv3_RS04400 0.31 +1.4 987,845 + RALBFv3_RS04400 0.70 +2.1 987,846 - RALBFv3_RS04400 0.70 -0.2 988,011 - -0.1 988,064 + -0.1 988,064 + +0.2 988,065 - -0.0 988,065 - -0.7 988,065 - +0.1 988,065 - +0.1 988,258 + -0.3 988,258 + -0.4 988,263 + -0.5
Or see this region's nucleotide sequence