Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS03845

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS03835 and RALBFv3_RS03840 overlap by 4 nucleotidesRALBFv3_RS03840 and RALBFv3_RS03845 are separated by 95 nucleotidesRALBFv3_RS03845 and RALBFv3_RS03850 overlap by 8 nucleotidesRALBFv3_RS03850 and RALBFv3_RS03855 are separated by 40 nucleotides RALBFv3_RS03835: RALBFv3_RS03835 - branched-chain amino acid ABC transporter permease, at 846,889 to 847,914 _RS03835 RALBFv3_RS03840: RALBFv3_RS03840 - branched-chain amino acid ABC transporter permease, at 847,911 to 848,780 _RS03840 RALBFv3_RS03845: RALBFv3_RS03845 - 4-carboxymuconolactone decarboxylase, at 848,876 to 849,271 _RS03845 RALBFv3_RS03850: RALBFv3_RS03850 - 3-oxoadipate enol-lactonase, at 849,264 to 850,076 _RS03850 RALBFv3_RS03855: RALBFv3_RS03855 - 3-carboxy-cis,cis-muconate cycloisomerase, at 850,117 to 851,478 _RS03855 Position (kb) 848 849 850Strain fitness (log2 ratio) -1 0 1 2at 847.973 kb on - strandat 848.002 kb on + strand, within RALBFv3_RS03840at 848.002 kb on + strand, within RALBFv3_RS03840at 848.003 kb on - strand, within RALBFv3_RS03840at 848.003 kb on - strand, within RALBFv3_RS03840at 848.003 kb on - strand, within RALBFv3_RS03840at 848.005 kb on + strand, within RALBFv3_RS03840at 848.005 kb on + strand, within RALBFv3_RS03840at 848.006 kb on - strand, within RALBFv3_RS03840at 848.101 kb on + strand, within RALBFv3_RS03840at 848.101 kb on + strand, within RALBFv3_RS03840at 848.102 kb on - strand, within RALBFv3_RS03840at 848.110 kb on + strand, within RALBFv3_RS03840at 848.110 kb on + strand, within RALBFv3_RS03840at 848.110 kb on + strand, within RALBFv3_RS03840at 848.110 kb on + strand, within RALBFv3_RS03840at 848.111 kb on - strand, within RALBFv3_RS03840at 848.111 kb on - strand, within RALBFv3_RS03840at 848.111 kb on - strand, within RALBFv3_RS03840at 848.111 kb on - strand, within RALBFv3_RS03840at 848.111 kb on - strand, within RALBFv3_RS03840at 848.111 kb on - strand, within RALBFv3_RS03840at 848.444 kb on + strand, within RALBFv3_RS03840at 848.444 kb on + strand, within RALBFv3_RS03840at 848.445 kb on - strand, within RALBFv3_RS03840at 848.445 kb on - strand, within RALBFv3_RS03840at 848.446 kb on + strand, within RALBFv3_RS03840at 848.447 kb on - strand, within RALBFv3_RS03840at 848.447 kb on - strand, within RALBFv3_RS03840at 848.447 kb on - strand, within RALBFv3_RS03840at 848.447 kb on - strand, within RALBFv3_RS03840at 848.447 kb on - strand, within RALBFv3_RS03840at 848.518 kb on + strand, within RALBFv3_RS03840at 848.518 kb on + strand, within RALBFv3_RS03840at 848.639 kb on - strand, within RALBFv3_RS03840at 848.740 kb on + strandat 848.961 kb on + strand, within RALBFv3_RS03845at 849.325 kb on + strandat 849.326 kb on - strandat 849.377 kb on - strand, within RALBFv3_RS03850at 849.530 kb on - strand, within RALBFv3_RS03850at 849.820 kb on + strand, within RALBFv3_RS03850

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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847,973 - +1.9
848,002 + RALBFv3_RS03840 0.10 -0.3
848,002 + RALBFv3_RS03840 0.10 -0.1
848,003 - RALBFv3_RS03840 0.11 +0.5
848,003 - RALBFv3_RS03840 0.11 +0.1
848,003 - RALBFv3_RS03840 0.11 -0.1
848,005 + RALBFv3_RS03840 0.11 -0.6
848,005 + RALBFv3_RS03840 0.11 +0.6
848,006 - RALBFv3_RS03840 0.11 +0.6
848,101 + RALBFv3_RS03840 0.22 +1.7
848,101 + RALBFv3_RS03840 0.22 -0.9
848,102 - RALBFv3_RS03840 0.22 +0.1
848,110 + RALBFv3_RS03840 0.23 -0.7
848,110 + RALBFv3_RS03840 0.23 -0.4
848,110 + RALBFv3_RS03840 0.23 -1.3
848,110 + RALBFv3_RS03840 0.23 -0.3
848,111 - RALBFv3_RS03840 0.23 +0.2
848,111 - RALBFv3_RS03840 0.23 +0.4
848,111 - RALBFv3_RS03840 0.23 -1.3
848,111 - RALBFv3_RS03840 0.23 -0.3
848,111 - RALBFv3_RS03840 0.23 -0.2
848,111 - RALBFv3_RS03840 0.23 +0.2
848,444 + RALBFv3_RS03840 0.61 +0.1
848,444 + RALBFv3_RS03840 0.61 -0.0
848,445 - RALBFv3_RS03840 0.61 -0.1
848,445 - RALBFv3_RS03840 0.61 -0.0
848,446 + RALBFv3_RS03840 0.61 +0.4
848,447 - RALBFv3_RS03840 0.62 -0.5
848,447 - RALBFv3_RS03840 0.62 +0.8
848,447 - RALBFv3_RS03840 0.62 -0.1
848,447 - RALBFv3_RS03840 0.62 +1.2
848,447 - RALBFv3_RS03840 0.62 -0.1
848,518 + RALBFv3_RS03840 0.70 +0.2
848,518 + RALBFv3_RS03840 0.70 -0.1
848,639 - RALBFv3_RS03840 0.84 +0.3
848,740 + +0.4
848,961 + RALBFv3_RS03845 0.21 +0.7
849,325 + +1.3
849,326 - +0.2
849,377 - RALBFv3_RS03850 0.14 -0.9
849,530 - RALBFv3_RS03850 0.33 -1.4
849,820 + RALBFv3_RS03850 0.68 +0.4

Or see this region's nucleotide sequence