Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03630 and RALBFv3_RS03635 are separated by 91 nucleotides RALBFv3_RS03635 and RALBFv3_RS03640 are separated by 107 nucleotides RALBFv3_RS03640 and RALBFv3_RS03645 are separated by 57 nucleotides
RALBFv3_RS03630: RALBFv3_RS03630 - flavodoxin family protein, at 798,319 to 798,891
_RS03630
RALBFv3_RS03635: RALBFv3_RS03635 - pirin family protein, at 798,983 to 799,681
_RS03635
RALBFv3_RS03640: RALBFv3_RS03640 - LysR family transcriptional regulator, at 799,789 to 800,691
_RS03640
RALBFv3_RS03645: RALBFv3_RS03645 - tRNA glutamyl-Q(34) synthetase GluQRS, at 800,749 to 801,696
_RS03645
Position (kb) 799
800
801 Strain fitness (log2 ratio) -1
0
1
2 at 799.084 kb on + strand, within RALBFv3_RS03635 at 799.186 kb on - strand, within RALBFv3_RS03635 at 799.483 kb on - strand, within RALBFv3_RS03635 at 799.596 kb on + strand, within RALBFv3_RS03635 at 799.705 kb on - strand at 799.741 kb on - strand at 800.134 kb on + strand, within RALBFv3_RS03640 at 800.388 kb on + strand, within RALBFv3_RS03640 at 800.388 kb on + strand, within RALBFv3_RS03640 at 800.530 kb on + strand, within RALBFv3_RS03640 at 800.614 kb on - strand at 800.690 kb on - strand at 801.086 kb on - strand, within RALBFv3_RS03645 at 801.445 kb on + strand, within RALBFv3_RS03645 at 801.445 kb on + strand, within RALBFv3_RS03645 at 801.446 kb on - strand, within RALBFv3_RS03645
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 799,084 + RALBFv3_RS03635 0.14 +1.1 799,186 - RALBFv3_RS03635 0.29 +0.0 799,483 - RALBFv3_RS03635 0.72 +2.4 799,596 + RALBFv3_RS03635 0.88 -0.0 799,705 - +0.9 799,741 - +0.2 800,134 + RALBFv3_RS03640 0.38 -0.3 800,388 + RALBFv3_RS03640 0.66 +0.7 800,388 + RALBFv3_RS03640 0.66 +1.2 800,530 + RALBFv3_RS03640 0.82 +0.2 800,614 - -0.7 800,690 - -0.1 801,086 - RALBFv3_RS03645 0.36 -0.9 801,445 + RALBFv3_RS03645 0.73 -0.8 801,445 + RALBFv3_RS03645 0.73 -0.2 801,446 - RALBFv3_RS03645 0.74 +0.0
Or see this region's nucleotide sequence