Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03550 and RALBFv3_RS03555 overlap by 4 nucleotides RALBFv3_RS03555 and RALBFv3_RS03560 are separated by 52 nucleotides RALBFv3_RS03560 and RALBFv3_RS03565 are separated by 21 nucleotides RALBFv3_RS03565 and RALBFv3_RS03570 are separated by 2 nucleotides
RALBFv3_RS03550: RALBFv3_RS03550 - coproporphyrinogen III oxidase, at 779,244 to 780,152
_RS03550
RALBFv3_RS03555: RALBFv3_RS03555 - nicotinate-nucleotide adenylyltransferase, at 780,149 to 780,844
_RS03555
RALBFv3_RS03560: RALBFv3_RS03560 - ribosome silencing factor, at 780,897 to 781,529
_RS03560
RALBFv3_RS03565: RALBFv3_RS03565 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 781,551 to 782,021
_RS03565
RALBFv3_RS03570: RALBFv3_RS03570 - septum formation inhibitor Maf, at 782,024 to 782,641
_RS03570
Position (kb) 780
781
782 Strain fitness (log2 ratio) -1
0
1 at 780.431 kb on + strand, within RALBFv3_RS03555 at 780.467 kb on + strand, within RALBFv3_RS03555 at 780.468 kb on - strand, within RALBFv3_RS03555 at 780.660 kb on + strand, within RALBFv3_RS03555 at 780.660 kb on + strand, within RALBFv3_RS03555 at 780.661 kb on - strand, within RALBFv3_RS03555 at 780.902 kb on + strand at 780.903 kb on - strand at 780.913 kb on + strand at 780.914 kb on - strand at 781.189 kb on - strand, within RALBFv3_RS03560 at 781.189 kb on - strand, within RALBFv3_RS03560 at 781.974 kb on + strand, within RALBFv3_RS03565 at 782.186 kb on + strand, within RALBFv3_RS03570 at 782.187 kb on - strand, within RALBFv3_RS03570 at 782.376 kb on + strand, within RALBFv3_RS03570 at 782.376 kb on + strand, within RALBFv3_RS03570 at 782.377 kb on - strand, within RALBFv3_RS03570 at 782.377 kb on - strand, within RALBFv3_RS03570 at 782.480 kb on + strand, within RALBFv3_RS03570
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 780,431 + RALBFv3_RS03555 0.41 +1.5 780,467 + RALBFv3_RS03555 0.46 -0.4 780,468 - RALBFv3_RS03555 0.46 -1.5 780,660 + RALBFv3_RS03555 0.73 -1.1 780,660 + RALBFv3_RS03555 0.73 -0.5 780,661 - RALBFv3_RS03555 0.74 +0.5 780,902 + -0.1 780,903 - -0.5 780,913 + +0.1 780,914 - +0.6 781,189 - RALBFv3_RS03560 0.46 +0.1 781,189 - RALBFv3_RS03560 0.46 +0.9 781,974 + RALBFv3_RS03565 0.90 +0.4 782,186 + RALBFv3_RS03570 0.26 +0.3 782,187 - RALBFv3_RS03570 0.26 +0.5 782,376 + RALBFv3_RS03570 0.57 +0.3 782,376 + RALBFv3_RS03570 0.57 -0.2 782,377 - RALBFv3_RS03570 0.57 -0.3 782,377 - RALBFv3_RS03570 0.57 +0.4 782,480 + RALBFv3_RS03570 0.74 +0.3
Or see this region's nucleotide sequence