Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03510 and RALBFv3_RS03515 overlap by 4 nucleotides RALBFv3_RS03515 and RALBFv3_RS03520 are separated by 10 nucleotides RALBFv3_RS03520 and RALBFv3_RS03525 are separated by 18 nucleotides
RALBFv3_RS03510: RALBFv3_RS03510 - quinone oxidoreductase, at 771,205 to 772,179
_RS03510
RALBFv3_RS03515: RALBFv3_RS03515 - methylglyoxal synthase, at 772,176 to 772,610
_RS03515
RALBFv3_RS03520: RALBFv3_RS03520 - 3-oxoacyl-ACP reductase, at 772,621 to 773,412
_RS03520
RALBFv3_RS03525: RALBFv3_RS03525 - EamA/RhaT family transporter, at 773,431 to 774,357
_RS03525
Position (kb) 772
773
774 Strain fitness (log2 ratio) -1
0
1 at 771.776 kb on + strand, within RALBFv3_RS03510 at 771.794 kb on + strand, within RALBFv3_RS03510 at 771.795 kb on - strand, within RALBFv3_RS03510 at 771.795 kb on - strand, within RALBFv3_RS03510 at 771.871 kb on - strand, within RALBFv3_RS03510 at 771.871 kb on - strand, within RALBFv3_RS03510 at 771.900 kb on - strand, within RALBFv3_RS03510 at 771.900 kb on - strand, within RALBFv3_RS03510 at 771.900 kb on - strand, within RALBFv3_RS03510 at 771.924 kb on - strand, within RALBFv3_RS03510 at 772.043 kb on + strand, within RALBFv3_RS03510 at 772.044 kb on - strand, within RALBFv3_RS03510 at 772.044 kb on - strand, within RALBFv3_RS03510 at 772.054 kb on - strand, within RALBFv3_RS03510 at 772.055 kb on + strand, within RALBFv3_RS03510 at 772.055 kb on + strand, within RALBFv3_RS03510 at 772.055 kb on + strand, within RALBFv3_RS03510 at 772.055 kb on + strand, within RALBFv3_RS03510 at 772.056 kb on - strand, within RALBFv3_RS03510 at 772.056 kb on - strand, within RALBFv3_RS03510 at 772.056 kb on - strand, within RALBFv3_RS03510 at 772.162 kb on - strand at 772.676 kb on + strand at 772.772 kb on + strand, within RALBFv3_RS03520 at 772.772 kb on + strand, within RALBFv3_RS03520 at 772.772 kb on + strand, within RALBFv3_RS03520 at 772.989 kb on + strand, within RALBFv3_RS03520 at 772.990 kb on - strand, within RALBFv3_RS03520 at 773.040 kb on + strand, within RALBFv3_RS03520 at 773.921 kb on + strand, within RALBFv3_RS03525 at 774.044 kb on + strand, within RALBFv3_RS03525 at 774.045 kb on - strand, within RALBFv3_RS03525 at 774.080 kb on + strand, within RALBFv3_RS03525 at 774.231 kb on - strand, within RALBFv3_RS03525 at 774.236 kb on + strand, within RALBFv3_RS03525 at 774.236 kb on + strand, within RALBFv3_RS03525 at 774.237 kb on - strand, within RALBFv3_RS03525 at 774.406 kb on + strand at 774.406 kb on + strand at 774.406 kb on + strand at 774.406 kb on + strand at 774.407 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 771,776 + RALBFv3_RS03510 0.59 +1.1 771,794 + RALBFv3_RS03510 0.60 -0.5 771,795 - RALBFv3_RS03510 0.61 +0.8 771,795 - RALBFv3_RS03510 0.61 +0.2 771,871 - RALBFv3_RS03510 0.68 -0.3 771,871 - RALBFv3_RS03510 0.68 -0.3 771,900 - RALBFv3_RS03510 0.71 +0.4 771,900 - RALBFv3_RS03510 0.71 +0.3 771,900 - RALBFv3_RS03510 0.71 +0.4 771,924 - RALBFv3_RS03510 0.74 +0.1 772,043 + RALBFv3_RS03510 0.86 +0.2 772,044 - RALBFv3_RS03510 0.86 +0.3 772,044 - RALBFv3_RS03510 0.86 -0.8 772,054 - RALBFv3_RS03510 0.87 -0.3 772,055 + RALBFv3_RS03510 0.87 -0.6 772,055 + RALBFv3_RS03510 0.87 -0.0 772,055 + RALBFv3_RS03510 0.87 -0.3 772,055 + RALBFv3_RS03510 0.87 +0.2 772,056 - RALBFv3_RS03510 0.87 -0.7 772,056 - RALBFv3_RS03510 0.87 -0.1 772,056 - RALBFv3_RS03510 0.87 +0.1 772,162 - -0.6 772,676 + -0.1 772,772 + RALBFv3_RS03520 0.19 +0.6 772,772 + RALBFv3_RS03520 0.19 +0.2 772,772 + RALBFv3_RS03520 0.19 +1.3 772,989 + RALBFv3_RS03520 0.46 +0.1 772,990 - RALBFv3_RS03520 0.47 +0.6 773,040 + RALBFv3_RS03520 0.53 -0.9 773,921 + RALBFv3_RS03525 0.53 +1.3 774,044 + RALBFv3_RS03525 0.66 +0.3 774,045 - RALBFv3_RS03525 0.66 -0.7 774,080 + RALBFv3_RS03525 0.70 +0.3 774,231 - RALBFv3_RS03525 0.86 -0.3 774,236 + RALBFv3_RS03525 0.87 +0.1 774,236 + RALBFv3_RS03525 0.87 +0.3 774,237 - RALBFv3_RS03525 0.87 -1.4 774,406 + -0.3 774,406 + -0.4 774,406 + -0.9 774,406 + +0.3 774,407 - +0.3
Or see this region's nucleotide sequence