Experiment: CPG
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03480 and RALBFv3_RS03485 are separated by 4 nucleotides RALBFv3_RS03485 and RALBFv3_RS23655 are separated by 182 nucleotides RALBFv3_RS23655 and RALBFv3_RS03495 are separated by 105 nucleotides
RALBFv3_RS03480: RALBFv3_RS03480 - radical SAM protein, at 766,456 to 767,523
_RS03480
RALBFv3_RS03485: RALBFv3_RS03485 - hypothetical protein, at 767,528 to 767,953
_RS03485
RALBFv3_RS23655: RALBFv3_RS23655 - GntR family transcriptional regulator, at 768,136 to 768,792
_RS23655
RALBFv3_RS03495: RALBFv3_RS03495 - MFS transporter, at 768,898 to 770,121
_RS03495
Position (kb) 767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 767.277 kb on - strand, within RALBFv3_RS03480 at 767.361 kb on + strand, within RALBFv3_RS03480 at 767.451 kb on - strand at 767.507 kb on + strand at 767.631 kb on + strand, within RALBFv3_RS03485 at 767.632 kb on - strand, within RALBFv3_RS03485 at 767.632 kb on - strand, within RALBFv3_RS03485 at 767.634 kb on + strand, within RALBFv3_RS03485 at 767.634 kb on + strand, within RALBFv3_RS03485 at 767.635 kb on - strand, within RALBFv3_RS03485 at 767.643 kb on + strand, within RALBFv3_RS03485 at 767.644 kb on - strand, within RALBFv3_RS03485 at 767.939 kb on + strand at 767.939 kb on + strand at 767.967 kb on - strand at 767.970 kb on + strand at 767.970 kb on + strand at 767.971 kb on - strand at 767.971 kb on - strand at 768.138 kb on - strand at 768.174 kb on + strand at 768.175 kb on - strand at 768.190 kb on + strand at 768.190 kb on + strand at 768.191 kb on - strand at 768.280 kb on + strand, within RALBFv3_RS23655 at 768.280 kb on + strand, within RALBFv3_RS23655 at 768.281 kb on - strand, within RALBFv3_RS23655 at 768.282 kb on - strand, within RALBFv3_RS23655 at 768.282 kb on - strand, within RALBFv3_RS23655 at 768.391 kb on - strand, within RALBFv3_RS23655 at 768.533 kb on - strand, within RALBFv3_RS23655 at 768.565 kb on - strand, within RALBFv3_RS23655 at 768.715 kb on - strand, within RALBFv3_RS23655 at 768.715 kb on - strand, within RALBFv3_RS23655
Per-strain Table
Position Strand Gene LocusTag Fraction CPG remove 767,277 - RALBFv3_RS03480 0.77 -0.5 767,361 + RALBFv3_RS03480 0.85 -0.7 767,451 - -0.0 767,507 + -0.4 767,631 + RALBFv3_RS03485 0.24 +1.5 767,632 - RALBFv3_RS03485 0.24 +1.2 767,632 - RALBFv3_RS03485 0.24 +0.7 767,634 + RALBFv3_RS03485 0.25 +0.5 767,634 + RALBFv3_RS03485 0.25 +0.5 767,635 - RALBFv3_RS03485 0.25 -0.1 767,643 + RALBFv3_RS03485 0.27 +2.1 767,644 - RALBFv3_RS03485 0.27 -0.5 767,939 + -0.3 767,939 + -1.5 767,967 - +0.5 767,970 + -0.7 767,970 + +2.4 767,971 - +0.5 767,971 - -0.3 768,138 - -0.4 768,174 + +0.6 768,175 - -0.2 768,190 + +0.9 768,190 + +1.8 768,191 - -0.7 768,280 + RALBFv3_RS23655 0.22 -0.4 768,280 + RALBFv3_RS23655 0.22 +0.3 768,281 - RALBFv3_RS23655 0.22 -1.4 768,282 - RALBFv3_RS23655 0.22 +0.2 768,282 - RALBFv3_RS23655 0.22 -2.8 768,391 - RALBFv3_RS23655 0.39 -0.1 768,533 - RALBFv3_RS23655 0.60 -1.9 768,565 - RALBFv3_RS23655 0.65 -0.2 768,715 - RALBFv3_RS23655 0.88 +0.4 768,715 - RALBFv3_RS23655 0.88 -0.3
Or see this region's nucleotide sequence