Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS02905

Experiment: CPG

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS02895 and RALBFv3_RS02900 are separated by 157 nucleotidesRALBFv3_RS02900 and RALBFv3_RS02905 are separated by 42 nucleotidesRALBFv3_RS02905 and RALBFv3_RS02910 are separated by 16 nucleotides RALBFv3_RS02895: RALBFv3_RS02895 - DUF1178 domain-containing protein, at 639,156 to 639,617 _RS02895 RALBFv3_RS02900: RALBFv3_RS02900 - NUDIX hydrolase, at 639,775 to 640,392 _RS02900 RALBFv3_RS02905: RALBFv3_RS02905 - DUF2818 domain-containing protein, at 640,435 to 640,746 _RS02905 RALBFv3_RS02910: RALBFv3_RS02910 - NADH-quinone oxidoreductase subunit NuoN, at 640,763 to 642,235 _RS02910 Position (kb) 640 641Strain fitness (log2 ratio) -1 0 1at 639.721 kb on + strandat 639.827 kb on - strandat 639.965 kb on + strand, within RALBFv3_RS02900at 639.965 kb on + strand, within RALBFv3_RS02900at 639.990 kb on - strand, within RALBFv3_RS02900at 640.517 kb on + strand, within RALBFv3_RS02905at 640.518 kb on - strand, within RALBFv3_RS02905at 640.592 kb on + strand, within RALBFv3_RS02905at 640.592 kb on + strand, within RALBFv3_RS02905

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Per-strain Table

Position Strand Gene LocusTag Fraction CPG
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639,721 + +0.3
639,827 - -0.1
639,965 + RALBFv3_RS02900 0.31 +0.6
639,965 + RALBFv3_RS02900 0.31 +0.7
639,990 - RALBFv3_RS02900 0.35 -1.2
640,517 + RALBFv3_RS02905 0.26 +0.5
640,518 - RALBFv3_RS02905 0.27 -0.7
640,592 + RALBFv3_RS02905 0.50 +1.0
640,592 + RALBFv3_RS02905 0.50 +0.0

Or see this region's nucleotide sequence